RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, human

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TMEM39A-204	ENST00000468545	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	4.37	□□□□□ -1.71
TMEM39A-204	ENST00000468545	PCDHB7	Q9Y5E2	793 aa		4.37	□□□□□ -1.71
TMEM39A-204	ENST00000468545	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	4.37	□□□□□ -1.71
TMEM39A-204	ENST00000468545	ATP23	Q9Y6H3	246 aa		4.37	□□□□□ -1.71
TMEM39A-204	ENST00000468545	SMIM28	A0A1B0GU29	152 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	SLC12A8	A0AV02	714 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	AKR1B15	C9JRZ8	316 aa	Predicted RBP	4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	ETV2	O00321	342 aa	Predicted RBP	4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	FAM189A1	O60320	539 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	BUB1B	O60566	1050 aa	Predicted RBP	4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	N4BP1	O75113	896 aa	Known RBP	4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	TSPAN15	O95858	294 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	HLA-DRA	P01903	254 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	LTF	P02788	710 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	C4BPA	P04003	597 aa	Known RBP	4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	ITGB3	P05106	788 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	C8B	P07358	591 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	TMEM253	P0C7T8	217 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	CAPN2	P17655	700 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	PTPN1	P18031	435 aa	Known RBP	4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	TRIM21	P19474	475 aa	Known RBP	4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	PON1	P27169	355 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	CASP14	P31944	242 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	GTF2H1	P32780	548 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	SOX5	P35711	763 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	MLH1	P40692	756 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	USP8	P40818	1118 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	MC3R	P41968	323 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	PIK3CA	P42336	1068 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	GATM	P50440	423 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	MXI1	P50539	228 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	SCNN1G	P51170	649 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	ADK	P55263	362 aa	Known RBP	4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	MYL6	P60660	151 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	POLR2F	P61218	127 aa	Known RBP	4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	RAPGEF1	Q13905	1077 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	PAN2	Q504Q3	1202 aa	Known RBP	4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	SPOUT1	Q5T280	376 aa	Known RBP	4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	SPECC1L	Q69YQ0	1117 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	SPOPL	Q6IQ16	392 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	PKN3	Q6P5Z2	889 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	ZNF662	Q6ZS27	426 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	SLC24A5	Q71RS6	500 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	RRAGA	Q7L523	313 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	OTOP2	Q7RTS6	562 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	TRAPPC11	Q7Z392	1133 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	TMCO2	Q7Z6W1	182 aa	Predicted RBP	4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	MRPL10	Q7Z7H8	261 aa	Known RBP	4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	B3GNT8	Q7Z7M8	397 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	ECHDC2	Q86YB7	292 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	WDR49	Q8IV35	697 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	CD302	Q8IX05	232 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	RBM12B	Q8IXT5	1001 aa	Known RBP	4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	EFCAB13	Q8IY85	973 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	RPUSD2	Q8IZ73	545 aa	Known RBP	4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	CCDC150	Q8NCX0	1101 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	BEST2	Q8NFU1	509 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	TAS1R2	Q8TE23	839 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	CHAC2	Q8WUX2	184 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	SEMA4D	Q92854	862 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	C18orf25	Q96B23	403 aa	Predicted RBP	4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	CCDC51	Q96ER9	411 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	SNX27	Q96L92	541 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	SIGLEC10	Q96LC7	697 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	ZMAT2	Q96NC0	199 aa	Known RBP	4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	FAM193B	Q96PV7	902 aa	Predicted RBP	4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	RPS6KC1	Q96S38	1066 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	GAD1	Q99259	594 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	HTATIP2	Q9BUP3	242 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	NUP58	Q9BVL2	599 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	FTHL17	Q9BXU8	183 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	MTMR12	Q9C0I1	747 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	WNT8A	Q9H1J5	351 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	ASB7	Q9H672	318 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	CAAP1	Q9H8G2	361 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	RSAD1	Q9HA92	442 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	PCDH18	Q9HCL0	1135 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	TMEM8A	Q9HCN3	771 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	UBE2T	Q9NPD8	197 aa	Predicted RBP	4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	RGS18	Q9NS28	235 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	RAB20	Q9NX57	234 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	DPP3	Q9NY33	737 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	GCNT4	Q9P109	453 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	DNAJC12	Q9UKB3	198 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	TBX21	Q9UL17	535 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	AGAP1	Q9UPQ3	857 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	FAN1	Q9Y2M0	1017 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	SQOR	Q9Y6N5	450 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	FRMPD3	Q5JV73	1810 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545	PTPRJ	Q12913	1337 aa		4.36	□□□□□ -1.71
TMEM39A-204	ENST00000468545		A0A0U1RQF3	1178 aa		4.35	□□□□□ -1.71
TMEM39A-204	ENST00000468545	TTC26	A0AVF1	554 aa		4.35	□□□□□ -1.71
TMEM39A-204	ENST00000468545	FAM170A	A1A519	330 aa		4.35	□□□□□ -1.71
TMEM39A-204	ENST00000468545	TCAF2	A6NFQ2	919 aa		4.35	□□□□□ -1.71
TMEM39A-204	ENST00000468545	ARL5C	A6NH57	179 aa		4.35	□□□□□ -1.71
TMEM39A-204	ENST00000468545	CASTOR2	A6NHX0	329 aa		4.35	□□□□□ -1.71
TMEM39A-204	ENST00000468545	TBKBP1	A7MCY6	615 aa		4.35	□□□□□ -1.71
TMEM39A-204	ENST00000468545	KCNK3	O14649	394 aa		4.35	□□□□□ -1.71

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