RNA–Protein interactions for RNA: ENST00000460940.5

APTX-209, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,874 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-209	ENST00000460940	CARD6	Q9BX69	1037 aa		11.51	□□□□□ -0.57
APTX-209	ENST00000460940	LTB4R2	Q9NPC1	389 aa		11.51	□□□□□ -0.57
APTX-209	ENST00000460940	SPHK2	Q9NRA0	654 aa		11.51	□□□□□ -0.57
APTX-209	ENST00000460940	METTL5	Q9NRN9	209 aa	Known RBP	11.51	□□□□□ -0.57
APTX-209	ENST00000460940	DDIT4	Q9NX09	232 aa		11.51	□□□□□ -0.57
APTX-209	ENST00000460940	AGO1	Q9UL18	857 aa	Known RBP	11.51	□□□□□ -0.57
APTX-209	ENST00000460940	COL4A3	Q01955	1670 aa		11.51	□□□□□ -0.57
APTX-209	ENST00000460940	SSU72P8	A0A1W2PR75	194 aa		11.51	□□□□□ -0.57
APTX-209	ENST00000460940	ANKRD62	A6NC57	917 aa		11.51	□□□□□ -0.57
APTX-209	ENST00000460940	F9	P00740	461 aa		11.51	□□□□□ -0.57
APTX-209	ENST00000460940	PDGFB	P01127	241 aa	Predicted RBP	11.51	□□□□□ -0.57
APTX-209	ENST00000460940	AOC1	P19801	751 aa		11.51	□□□□□ -0.57
APTX-209	ENST00000460940	EIF2D	P41214	584 aa	Known RBP	11.51	□□□□□ -0.57
APTX-209	ENST00000460940	SOX9	P48436	509 aa		11.51	□□□□□ -0.57
APTX-209	ENST00000460940	GAD2	Q05329	585 aa		11.51	□□□□□ -0.57
APTX-209	ENST00000460940	EIF4EBP2	Q13542	120 aa	Predicted RBP	11.51	□□□□□ -0.57
APTX-209	ENST00000460940	SLC25A52	Q3SY17	297 aa		11.51	□□□□□ -0.57
APTX-209	ENST00000460940	LY6G5C	Q5SRR4	150 aa		11.51	□□□□□ -0.57
APTX-209	ENST00000460940	ASTL	Q6HA08	431 aa	Predicted RBP	11.51	□□□□□ -0.57
APTX-209	ENST00000460940	RHBDF2	Q6PJF5	856 aa		11.51	□□□□□ -0.57
APTX-209	ENST00000460940	DENND1C	Q8IV53	801 aa		11.51	□□□□□ -0.57
APTX-209	ENST00000460940	PJA1	Q8NG27	643 aa		11.51	□□□□□ -0.57
APTX-209	ENST00000460940	TTC8	Q8TAM2	541 aa		11.51	□□□□□ -0.57
APTX-209	ENST00000460940	ADAM32	Q8TC27	787 aa		11.51	□□□□□ -0.57
APTX-209	ENST00000460940	PGAP3	Q96FM1	320 aa	Predicted RBP	11.51	□□□□□ -0.57
APTX-209	ENST00000460940	NPY6R	Q99463	290 aa		11.51	□□□□□ -0.57
APTX-209	ENST00000460940	DDX50	Q9BQ39	737 aa	Known RBP	11.51	□□□□□ -0.57
APTX-209	ENST00000460940	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	11.51	□□□□□ -0.57
APTX-209	ENST00000460940	SELENOO	Q9BVL4	669 aa		11.51	□□□□□ -0.57
APTX-209	ENST00000460940	TAS2R14	Q9NYV8	317 aa		11.51	□□□□□ -0.57
APTX-209	ENST00000460940	ARHGAP20	Q9P2F6	1191 aa		11.51	□□□□□ -0.57
APTX-209	ENST00000460940	GOLGA6L9	A6NEM1	432 aa		11.5	□□□□□ -0.57
APTX-209	ENST00000460940	SHISA7	A6NL88	538 aa		11.5	□□□□□ -0.57
APTX-209	ENST00000460940	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	11.5	□□□□□ -0.57
APTX-209	ENST00000460940	TRDMT1	O14717	391 aa	Known RBP	11.5	□□□□□ -0.57
APTX-209	ENST00000460940	NCAM2	O15394	837 aa		11.5	□□□□□ -0.57
APTX-209	ENST00000460940	KRT3	P12035	628 aa		11.5	□□□□□ -0.57
APTX-209	ENST00000460940	CCR1	P32246	355 aa		11.5	□□□□□ -0.57
APTX-209	ENST00000460940	FLT3	P36888	993 aa		11.5	□□□□□ -0.57
APTX-209	ENST00000460940	RNASE9	P60153	205 aa	Known RBP	11.5	□□□□□ -0.57
APTX-209	ENST00000460940	PPP2R5D	Q14738	602 aa		11.5	□□□□□ -0.57
APTX-209	ENST00000460940	LONRF2	Q1L5Z9	754 aa		11.5	□□□□□ -0.57
APTX-209	ENST00000460940	ADGRF1	Q5T601	910 aa		11.5	□□□□□ -0.57
APTX-209	ENST00000460940	WDR59	Q6PJI9	974 aa		11.5	□□□□□ -0.57
APTX-209	ENST00000460940	SND1	Q7KZF4	910 aa	Known RBP eCLIP	11.5	□□□□□ -0.57
APTX-209	ENST00000460940	ISCU	Q9H1K1	167 aa		11.5	□□□□□ -0.57
APTX-209	ENST00000460940	PARVA	Q9NVD7	372 aa		11.5	□□□□□ -0.57
APTX-209	ENST00000460940	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	11.5	□□□□□ -0.57
APTX-209	ENST00000460940	ADAMTS1	Q9UHI8	967 aa		11.5	□□□□□ -0.57
APTX-209	ENST00000460940	SLC12A6	Q9UHW9	1150 aa		11.5	□□□□□ -0.57
APTX-209	ENST00000460940	TCRBV5S1A1T	A0A578	114 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	FAM170A	A1A519	330 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	SIGLEC16	A6NMB1	481 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	TMCO5B	A8MYB1	307 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940		M0QYT0	321 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	STK25	O00506	426 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	FTL	P02792	175 aa	Predicted RBP	11.49	□□□□□ -0.57
APTX-209	ENST00000460940	CYBB	P04839	570 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	PLEK	P08567	350 aa	Predicted RBP	11.49	□□□□□ -0.57
APTX-209	ENST00000460940	RRM1	P23921	792 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	TARS	P26639	723 aa	Known RBP	11.49	□□□□□ -0.57
APTX-209	ENST00000460940	SDC4	P31431	198 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	PTPN9	P43378	593 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	SULT1E1	P49888	294 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	ADK	P55263	362 aa	Known RBP	11.49	□□□□□ -0.57
APTX-209	ENST00000460940	TUBB4B	P68371	445 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	PITX1	P78337	314 aa	Predicted RBP	11.49	□□□□□ -0.57
APTX-209	ENST00000460940	GRSF1	Q12849	480 aa	Known RBP eCLIP	11.49	□□□□□ -0.57
APTX-209	ENST00000460940	LRRC32	Q14392	662 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	UBXN2B	Q14CS0	331 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	GAB4	Q2WGN9	574 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	PREPL	Q4J6C6	727 aa	Predicted RBP	11.49	□□□□□ -0.57
APTX-209	ENST00000460940	BRMS1L	Q5PSV4	323 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	OTUD1	Q5VV17	481 aa	Predicted RBP	11.49	□□□□□ -0.57
APTX-209	ENST00000460940	TXNDC11	Q6PKC3	985 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	CCDC105	Q8IYK2	499 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	ZNF687	Q8N1G0	1237 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	ATP6V0D2	Q8N8Y2	350 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	CD101	Q93033	1021 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	CHFR	Q96EP1	664 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	BTN2A3P	Q96KV6	586 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	P2RY13	Q9BPV8	354 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	IER2	Q9BTL4	223 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	FOXQ1	Q9C009	403 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	SIT1	Q9Y3P8	196 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	SCIN	Q9Y6U3	715 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	C2CD4B	A6NLJ0	364 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	FAM170B	A6NMN3	283 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	CACNG3	O60359	315 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	ACSL4	O60488	711 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	URI1	O94763	535 aa	Predicted RBP	11.49	□□□□□ -0.57
APTX-209	ENST00000460940	PENK	P01210	267 aa	Predicted RBP	11.49	□□□□□ -0.57
APTX-209	ENST00000460940	PDGFRA	P16234	1089 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	DES	P17661	470 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	ABCB4	P21439	1286 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	DRD1	P21728	446 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	RDX	P35241	583 aa	Known RBP	11.49	□□□□□ -0.57
APTX-209	ENST00000460940	EIF4A3	P38919	411 aa	Known RBP	11.49	□□□□□ -0.57
APTX-209	ENST00000460940	CXCR3	P49682	368 aa		11.49	□□□□□ -0.57
APTX-209	ENST00000460940	NUBP1	P53384	320 aa		11.49	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms