RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 SPATA31D4Q6ZUB0 917 aa7.61□□□□□ -1.19
SYNE1-213ENST00000448038 SLC4A11Q8NBS3 891 aa7.61□□□□□ -1.19
SYNE1-213ENST00000448038 LRRN4CLQ8ND94 238 aa7.61□□□□□ -1.19
SYNE1-213ENST00000448038 SDCCAG3Q96C92 435 aa7.61□□□□□ -1.19
SYNE1-213ENST00000448038 PPP1R36Q96LQ0 422 aa7.61□□□□□ -1.19
SYNE1-213ENST00000448038 VAT1Q99536 393 aa7.61□□□□□ -1.19
SYNE1-213ENST00000448038 UBE2OQ9C0C9 1292 aaKnown RBP7.61□□□□□ -1.19
SYNE1-213ENST00000448038 HSD3B7Q9H2F3 369 aa7.61□□□□□ -1.19
SYNE1-213ENST00000448038 SEMA4AQ9H3S1 761 aa7.61□□□□□ -1.19
SYNE1-213ENST00000448038 NRDE2Q9H7Z3 1164 aa7.61□□□□□ -1.19
SYNE1-213ENST00000448038 PIH1D1Q9NWS0 290 aaKnown RBP7.61□□□□□ -1.19
SYNE1-213ENST00000448038 STXBP5LQ9Y2K9 1186 aa7.61□□□□□ -1.19
SYNE1-213ENST00000448038 TMEM191CA6NGB0 347 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 GYG2O15488 501 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 NOL3O60936 208 aaKnown RBP7.6□□□□□ -1.19
SYNE1-213ENST00000448038 TMCC1O94876 653 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 ZWINTO95229 277 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 PECAM1P16284 738 aaPredicted RBP7.6□□□□□ -1.19
SYNE1-213ENST00000448038 GJA9P57773 515 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 FAM83EQ2M2I3 478 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 SLC45A4Q5BKX6 768 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 CES5AQ6NT32 575 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 HIBCHQ6NVY1 386 aaPredicted RBP7.6□□□□□ -1.19
SYNE1-213ENST00000448038 POLNQ7Z5Q5 900 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 KAT2BQ92831 832 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 APOL5Q9BWW9 433 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 WWP1Q9H0M0 922 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 FGFR1OP2Q9NVK5 253 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 TRMT6Q9UJA5 497 aaKnown RBP7.6□□□□□ -1.19
SYNE1-213ENST00000448038 MAP3K7O43318 606 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 TIMM44O43615 452 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 GLUD1P00367 558 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 ELK3P41970 407 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 HDAC4P56524 1084 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 ECHDC2Q86YB7 292 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 HES6Q96HZ4 224 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 PCYT2Q99447 389 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 PAFAH2Q99487 392 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 SFMBT1Q9UHJ3 866 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 COQ4Q9Y3A0 265 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 MYH6P13533 1939 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 PDE2AO00408 941 aaPredicted RBP7.6□□□□□ -1.19
SYNE1-213ENST00000448038 RGS20O76081 388 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 ZSCAN5DPP0CG00 497 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 GOT1P17174 413 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 ITGALP20701 1170 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 EDNRBP24530 442 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 MMP13P45452 471 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 FAM187BQ17R55 369 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 UGT3A1Q6NUS8 523 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 SPATA21Q7Z572 469 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 STRA8Q7Z7C7 330 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 RBM23Q86U06 439 aaKnown RBP7.6□□□□□ -1.19
SYNE1-213ENST00000448038 XYLT1Q86Y38 959 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 ARMC2Q8NEN0 867 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 FAM167BQ9BTA0 163 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 FUT8Q9BYC5 575 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 DPEP3Q9H4B8 488 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 MARCOQ9UEW3 520 aaPredicted RBP7.6□□□□□ -1.19
SYNE1-213ENST00000448038 PCDHGC3Q9UN70 934 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 DDX60Q8IY21 1712 aaKnown RBP7.6□□□□□ -1.19
SYNE1-213ENST00000448038 MYO1DO94832 1006 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 H2AFXP16104 143 aaPredicted RBP7.6□□□□□ -1.19
SYNE1-213ENST00000448038 POU5F1Q01860 360 aaKnown RBP7.6□□□□□ -1.19
SYNE1-213ENST00000448038 TAF10Q12962 218 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 DPYSL3Q14195 570 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 TRADDQ15628 312 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 TBCCQ15814 346 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 ZNF284Q2VY69 593 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 TTLL9Q3SXZ7 439 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 SLC25A52Q3SY17 297 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 TRIB2Q92519 343 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 ZNF516Q92618 1163 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 SGF29Q96ES7 293 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 ACBD6Q9BR61 282 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 ZNF670Q9BS34 389 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 EFHD1Q9BUP0 239 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 ZYG11BQ9C0D3 744 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 TTYH3Q9C0H2 523 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 SEPT3Q9UH03 358 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 FAM153AQ9UHL3 310 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 ADAMTS5Q9UNA0 930 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 DOLKQ9UPQ8 538 aa7.6□□□□□ -1.19
SYNE1-213ENST00000448038 MAGEB16A2A368 324 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 HEATR9A2RTY3 570 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 SYN3O14994 580 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 CCDC22O60826 627 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 VNN1O95497 513 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 MGAT1P26572 445 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 SMAD3P84022 425 aaKnown RBP7.59□□□□□ -1.19
SYNE1-213ENST00000448038 SFSWAPQ12872 951 aaKnown RBP7.59□□□□□ -1.19
SYNE1-213ENST00000448038 MPP3Q13368 585 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 E2F5Q15329 346 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 TARBP2Q15633 366 aaKnown RBP7.59□□□□□ -1.19
SYNE1-213ENST00000448038 PLEKHA7Q6IQ23 1121 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 MAMDC4Q6UXC1 1216 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 PTAR1Q7Z6K3 402 aaPredicted RBP7.59□□□□□ -1.19
SYNE1-213ENST00000448038 TMEM139Q8IV31 216 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 ZNF296Q8WUU4 475 aaPredicted RBP7.59□□□□□ -1.19
SYNE1-213ENST00000448038 FAM124BQ9H5Z6 455 aaPredicted RBP7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms