RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 ZFP28Q8NHY6 868 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 FAM120BQ96EK7 910 aaKnown RBP7.02□□□□□ -1.29
SCN1A-204ENST00000423058 SLC9A7Q96T83 725 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 SPATA9Q9BWV2 254 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 CPVLQ9H3G5 476 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 KCNH7Q9NS40 1196 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 ATAD3AQ9NVI7 634 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 DBR1Q9UK59 544 aaKnown RBP7.02□□□□□ -1.29
SCN1A-204ENST00000423058 SLC27A6Q9Y2P4 619 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 IQGAP3Q86VI3 1631 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 TTC26A0AVF1 554 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 RGS14O43566 566 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 KCNA3P22001 575 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 CRABP2P29373 138 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 CBX5P45973 191 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 GALCP54803 685 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 INHBEP58166 350 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 CRYMQ14894 314 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 R3HCC1LQ7Z5L2 792 aaKnown RBP7.02□□□□□ -1.29
SCN1A-204ENST00000423058 NSUN4Q96CB9 384 aaKnown RBP7.02□□□□□ -1.29
SCN1A-204ENST00000423058 SERPINB11Q96P15 392 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 ELOVL4Q9GZR5 314 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 KLHL1Q9NR64 748 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 TSC22D4Q9Y3Q8 395 aa7.02□□□□□ -1.29
SCN1A-204ENST00000423058 DGKIO75912 1065 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 CABYRO75952 493 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 ABCB1P08183 1280 aaPredicted RBP7.01□□□□□ -1.29
SCN1A-204ENST00000423058 NFKB1P19838 968 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 SERPINA4P29622 427 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 SOX11P35716 441 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 IRX1P78414 480 aaPredicted RBP7.01□□□□□ -1.29
SCN1A-204ENST00000423058 BST2Q10589 180 aaKnown RBP7.01□□□□□ -1.29
SCN1A-204ENST00000423058 CCDC153Q494R4 210 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 FAM46CQ5VWP2 391 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 OVOS1Q6IE37 1185 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 LAYNQ6UX15 382 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 UXS1Q8NBZ7 420 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 SYN2Q92777 582 aaPredicted RBP7.01□□□□□ -1.29
SCN1A-204ENST00000423058 RIT1Q92963 219 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 TPD52L3Q96J77 140 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 FAIM2Q9BWQ8 316 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 TAS2R13Q9NYV9 303 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 SNX12Q9UMY4 172 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 CPS1P31327 1500 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 EFCAB10A6NFE3 127 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 GTPBP1O00178 669 aaKnown RBP7.01□□□□□ -1.29
SCN1A-204ENST00000423058 MSH4O15457 936 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 CHN1P15882 459 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 RPA1P27694 616 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 RHAGQ02094 409 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 TRIP10Q15642 601 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 LONRF1Q17RB8 773 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 CDC42EP5Q6NZY7 148 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 STRA8Q7Z7C7 330 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 DSELQ8IZU8 1212 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 NKX2-3Q8TAU0 364 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 MDM1Q8TC05 714 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 ZDHHC15Q96MV8 337 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 KLHL25Q9H0H3 589 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 CCDC154A6NI56 674 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 NCK2O43639 380 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 SARSP49591 514 aaKnown RBP7.01□□□□□ -1.29
SCN1A-204ENST00000423058 BACE1P56817 501 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 SNRPD1P62314 119 aaKnown RBP7.01□□□□□ -1.29
SCN1A-204ENST00000423058 FAM171A1Q5VUB5 890 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 LZTR1Q8N653 840 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 MYCBPAPQ8TBZ2 947 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 UGT2B28Q9BY64 529 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 TRIM9Q9C026 710 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 NECTIN3Q9NQS3 549 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 DNAJC11Q9NVH1 559 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 GGT7Q9UJ14 662 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 GSTK1Q9Y2Q3 226 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 A0A0A6YYK5 440 aaPredicted RBP7.01□□□□□ -1.29
SCN1A-204ENST00000423058 A0A1W2PQJ5 194 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 GSG1L2A8MUP6 293 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 H3BN98 237 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 MYL12BO14950 172 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 MLH1P40692 756 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 SKIV2L2P42285 1042 aaKnown RBP7.01□□□□□ -1.29
SCN1A-204ENST00000423058 CBFBQ13951 182 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 C9orf131Q5VYM1 1079 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 CYP4X1Q8N118 509 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 ZNF786Q8N393 782 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 CCDC185Q8N715 623 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 DDHD1Q8NEL9 900 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 PJA1Q8NG27 643 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 CXorf40BQ96DE9 158 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 CBWD1Q9BRT8 395 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 MTMR12Q9C0I1 747 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 TMEM39BQ9GZU3 492 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 DUSP12Q9UNI6 340 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 CNTNAP2Q9UHC6 1331 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 NR5A2O00482 541 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 ZNF862O60290 1169 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 ATP1A3P13637 1013 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 CCND1P24385 295 aa7.01□□□□□ -1.29
SCN1A-204ENST00000423058 HNRNPH1P31943 449 aaKnown RBP7.01□□□□□ -1.29
SCN1A-204ENST00000423058 FXR2P51116 673 aaKnown RBP eCLIP7.01□□□□□ -1.29
SCN1A-204ENST00000423058 FAM228AQ86W67 206 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms