RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 BDNFP23560 247 aa13.79□□□□□ -0.2
VPS54-203ENST00000409558 PDK2Q15119 407 aa13.79□□□□□ -0.2
VPS54-203ENST00000409558 NCBP2-AS2Q69YL0 99 aa13.79□□□□□ -0.2
VPS54-203ENST00000409558 RINLQ6ZS11 566 aa13.79□□□□□ -0.2
VPS54-203ENST00000409558 RNF135Q8IUD6 432 aa13.79□□□□□ -0.2
VPS54-203ENST00000409558 SCN4BQ8IWT1 228 aa13.79□□□□□ -0.2
VPS54-203ENST00000409558 ANKRD52Q8NB46 1076 aa13.79□□□□□ -0.2
VPS54-203ENST00000409558 MFSD3Q96ES6 412 aa13.79□□□□□ -0.2
VPS54-203ENST00000409558 RAB3IPQ96QF0 476 aaPredicted RBP13.79□□□□□ -0.2
VPS54-203ENST00000409558 AP5M1Q9H0R1 490 aa13.79□□□□□ -0.2
VPS54-203ENST00000409558 ARHGEF4Q9NR80 690 aa13.79□□□□□ -0.2
VPS54-203ENST00000409558 ARID2Q68CP9 1835 aa13.79□□□□□ -0.2
VPS54-203ENST00000409558 MYADML2A6NDP7 307 aa13.79□□□□□ -0.2
VPS54-203ENST00000409558 KRT36O76013 467 aa13.79□□□□□ -0.2
VPS54-203ENST00000409558 JCHAINP01591 159 aa13.79□□□□□ -0.2
VPS54-203ENST00000409558 ELF1P32519 619 aa13.79□□□□□ -0.2
VPS54-203ENST00000409558 TAF1CQ15572 869 aaPredicted RBP13.79□□□□□ -0.2
VPS54-203ENST00000409558 PCSK7Q16549 785 aa13.79□□□□□ -0.2
VPS54-203ENST00000409558 PREPLQ4J6C6 727 aaPredicted RBP13.79□□□□□ -0.2
VPS54-203ENST00000409558 CES4AQ5XG92 561 aa13.79□□□□□ -0.2
VPS54-203ENST00000409558 SLC4A1P02730 911 aa13.79□□□□□ -0.2
VPS54-203ENST00000409558 HUNKP57058 714 aa13.79□□□□□ -0.2
VPS54-203ENST00000409558 TPI1P60174 286 aa13.79□□□□□ -0.2
VPS54-203ENST00000409558 INCA1Q0VD86 236 aa13.79□□□□□ -0.2
VPS54-203ENST00000409558 KHDC1Q4VXA5 237 aaKnown RBP13.79□□□□□ -0.2
VPS54-203ENST00000409558 SLC7A6OSQ96CW6 309 aaPredicted RBP13.79□□□□□ -0.2
VPS54-203ENST00000409558 MIPEPQ99797 713 aa13.79□□□□□ -0.2
VPS54-203ENST00000409558 DNAJC16Q9Y2G8 782 aa13.79□□□□□ -0.2
VPS54-203ENST00000409558 MSX2P35548 267 aaPredicted RBP13.78□□□□□ -0.2
VPS54-203ENST00000409558 CCR10P46092 362 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 GABRB2P47870 512 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 CXCR3P49682 368 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 CXorf56Q9H5V9 222 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 ANLNQ9NQW6 1124 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 MTMR10Q9NXD2 777 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 TTC24A2A3L6 582 aaPredicted RBP13.78□□□□□ -0.2
VPS54-203ENST00000409558 MSI1O43347 362 aaKnown RBP13.78□□□□□ -0.2
VPS54-203ENST00000409558 PTPN1P18031 435 aaKnown RBP13.78□□□□□ -0.2
VPS54-203ENST00000409558 ERCC2P18074 760 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 RASSF2P50749 326 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 MRPS5P82675 430 aaKnown RBP13.78□□□□□ -0.2
VPS54-203ENST00000409558 ITKQ08881 620 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 USP4Q13107 963 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 THOC5Q13769 683 aaKnown RBP13.78□□□□□ -0.2
VPS54-203ENST00000409558 ITGA9Q13797 1035 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 RCN1Q15293 331 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 FASTKD1Q53R41 847 aaKnown RBP13.78□□□□□ -0.2
VPS54-203ENST00000409558 TMEM110Q86TL2 294 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 DCLK2Q8N568 766 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 SENP8Q96LD8 212 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 SLC4A5Q9BY07 1137 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 OXCT2Q9BYC2 517 aaPredicted RBP13.78□□□□□ -0.2
VPS54-203ENST00000409558 PAPPA2Q9BXP8 1791 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 PSME4Q14997 1843 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 GPR32O75388 356 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 DGKIO75912 1065 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 ENPEPQ07075 957 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 SEPT6Q14141 434 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 MUM1Q2TAK8 710 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 TDRPQ86YL5 185 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 ZNF778Q96MU6 729 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 EBNA1BP2Q99848 306 aaKnown RBP13.78□□□□□ -0.2
VPS54-203ENST00000409558 ADAMTS10Q9H324 1103 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 TMEM30AQ9NV96 361 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 PNPOQ9NVS9 261 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 CHADO15335 359 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 HMBSP08397 361 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 STX3Q13277 289 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 CRLF3Q8IUI8 442 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 RELL1Q8IUW5 271 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 SPATA22Q8NHS9 363 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 SCAMP5Q8TAC9 235 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 GSDMBQ8TAX9 411 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 SCYL1Q96KG9 808 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 SLC24A3Q9HC58 644 aa13.78□□□□□ -0.2
VPS54-203ENST00000409558 EME2A4GXA9 379 aaPredicted RBP13.77□□□□□ -0.2
VPS54-203ENST00000409558 PHGDHO43175 533 aaKnown RBP13.77□□□□□ -0.2
VPS54-203ENST00000409558 CSPG5O95196 566 aa13.77□□□□□ -0.2
VPS54-203ENST00000409558 ZNF460Q14592 562 aa13.77□□□□□ -0.2
VPS54-203ENST00000409558 KIAA0319Q5VV43 1072 aa13.77□□□□□ -0.2
VPS54-203ENST00000409558 OTOP3Q7RTS5 596 aa13.77□□□□□ -0.2
VPS54-203ENST00000409558 ZNF567Q8N184 647 aa13.77□□□□□ -0.2
VPS54-203ENST00000409558 WDR60Q8WVS4 1066 aa13.77□□□□□ -0.2
VPS54-203ENST00000409558 STMN2Q93045 179 aa13.77□□□□□ -0.2
VPS54-203ENST00000409558 SIGLEC10Q96LC7 697 aa13.77□□□□□ -0.2
VPS54-203ENST00000409558 CADM1Q9BY67 442 aaKnown RBP13.77□□□□□ -0.2
VPS54-203ENST00000409558 PLAC1Q9HBJ0 212 aa13.77□□□□□ -0.2
VPS54-203ENST00000409558 MIOSQ9NXC5 875 aa13.77□□□□□ -0.2
VPS54-203ENST00000409558 PDE5AO76074 875 aa13.77□□□□□ -0.21
VPS54-203ENST00000409558 STK10O94804 968 aaKnown RBP13.77□□□□□ -0.21
VPS54-203ENST00000409558 SORBS2O94875 1100 aaKnown RBP13.77□□□□□ -0.21
VPS54-203ENST00000409558 MT-CO1P00395 513 aa13.77□□□□□ -0.21
VPS54-203ENST00000409558 PGM1P36871 562 aa13.77□□□□□ -0.21
VPS54-203ENST00000409558 POU6F1Q14863 301 aa13.77□□□□□ -0.21
VPS54-203ENST00000409558 DCAF4L1Q3SXM0 396 aa13.77□□□□□ -0.21
VPS54-203ENST00000409558 OXNAD1Q96HP4 312 aaPredicted RBP13.77□□□□□ -0.21
VPS54-203ENST00000409558 TNIP3Q96KP6 325 aa13.77□□□□□ -0.21
VPS54-203ENST00000409558 MARK4Q96L34 752 aa13.77□□□□□ -0.21
VPS54-203ENST00000409558 TMEM209Q96SK2 561 aa13.77□□□□□ -0.21
VPS54-203ENST00000409558 SFMBT1Q9UHJ3 866 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms