RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 FAF2Q96CS3 445 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 SIPA1Q96FS4 1042 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 FEM1CQ96JP0 617 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 ZIC5Q96T25 663 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 ELAC2Q9BQ52 826 aaKnown RBP7.5□□□□□ -1.21
SCN9A-202ENST00000409435 PDCD10Q9BUL8 212 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 RRN3Q9NYV6 651 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 ZFP69BQ9UJL9 534 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 APOBEC2Q9Y235 224 aaKnown RBP7.5□□□□□ -1.21
SCN9A-202ENST00000409435 PP2D1A8MPX8 630 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 FPGTO14772 594 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 ASNA1O43681 348 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 CASP7P55210 303 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 ZC2HC1CQ53FD0 456 aaPredicted RBP7.5□□□□□ -1.21
SCN9A-202ENST00000409435 DGKKQ5KSL6 1271 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 TIGD7Q6NT04 549 aaPredicted RBP7.5□□□□□ -1.21
SCN9A-202ENST00000409435 SLC5A5Q92911 643 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 PHF21AQ96BD5 680 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 B3GALT6Q96L58 329 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 NUP85Q9BW27 656 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 PRDM16Q9HAZ2 1276 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 IL1RAPL1Q9NZN1 696 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 ZNHIT2Q9UHR6 403 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 VPS51Q9UID3 782 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 MAP2P11137 1827 aaKnown RBP7.49□□□□□ -1.21
SCN9A-202ENST00000409435 ANKRD65E5RJM6 399 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 POC1B-GALNT4F8VUJ3 575 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 TSC22D2O75157 780 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 GUCY1B2O75343 617 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 KATNA1O75449 491 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 GJB5O95377 273 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 RPL17P18621 184 aaKnown RBP7.49□□□□□ -1.21
SCN9A-202ENST00000409435 CCR3P51677 355 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 CAMKK1Q8N5S9 505 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 DAGLBQ8NCG7 672 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 RNF19AQ9NV58 838 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 ANAPC7Q9UJX3 599 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 PCDHA5Q9Y5H7 936 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 KNDC1Q76NI1 1749 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 TARSL2A2RTX5 802 aaKnown RBP7.49□□□□□ -1.21
SCN9A-202ENST00000409435 IL12RB1P42701 662 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 RGS4P49798 205 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 FXR2P51116 673 aaKnown RBP eCLIP7.49□□□□□ -1.21
SCN9A-202ENST00000409435 CYTH1Q15438 398 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 DDR2Q16832 855 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 HABP4Q5JVS0 413 aaKnown RBP7.49□□□□□ -1.21
SCN9A-202ENST00000409435 KHDRBS2Q5VWX1 349 aaKnown RBP7.49□□□□□ -1.21
SCN9A-202ENST00000409435 RNF43Q68DV7 783 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.49□□□□□ -1.21
SCN9A-202ENST00000409435 OR8K1Q8NGG5 319 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 FOXJ1Q92949 421 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 OSBPL2Q9H1P3 480 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 SLC2A4RGQ9NR83 387 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 COLQQ9Y215 455 aaPredicted RBP7.49□□□□□ -1.21
SCN9A-202ENST00000409435 GRXCR1A8MXD5 290 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 NRP1O14786 923 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 DCXO43602 365 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 ANXA5P08758 320 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 SLC9A1P19634 815 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 TAC1P20366 129 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 CCND1P24385 295 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 GPR1P46091 355 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 FOXM1Q08050 763 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 LBRQ14739 615 aaKnown RBP7.49□□□□□ -1.21
SCN9A-202ENST00000409435 RAET1GQ6H3X3 334 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 USP45Q70EL2 814 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 KRT74Q7RTS7 529 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 LRRC49Q8IUZ0 686 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 LRRC8AQ8IWT6 810 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 GPR152Q8TDT2 470 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 FAR2Q96K12 515 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 PNKPQ96T60 521 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 PITPNM3Q9BZ71 974 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 TMEM134Q9H6X4 195 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 LMAN1LQ9HAT1 526 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 RWDD2AQ9UIY3 292 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 NOVA2Q9UNW9 492 aaKnown RBP7.49□□□□□ -1.21
SCN9A-202ENST00000409435 RUVBL2Q9Y230 463 aaKnown RBP7.49□□□□□ -1.21
SCN9A-202ENST00000409435 SALL3Q9BXA9 1300 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 BIRC5O15392 142 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 HAUS5O94927 633 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 PSMA4P25789 261 aaKnown RBP7.49□□□□□ -1.21
SCN9A-202ENST00000409435 ADCY2Q08462 1091 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 TCEAL5Q5H9L2 206 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 ARMC3Q5W041 872 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 SLC36A4Q6YBV0 504 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 C11orf96Q7Z7L8 435 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 TCAIMQ8N3R3 496 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 TERB1Q8NA31 727 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 MAML1Q92585 1016 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 MYLPFQ96A32 169 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 BTBD1Q9H0C5 482 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 LHX5Q9H2C1 402 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 ARHGEF3Q9NR81 526 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 KIF17Q9P2E2 1029 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 HEATR9A2RTY3 570 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 SNPHO15079 494 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 RAMP2O60895 175 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 HOXB2P14652 356 aa7.49□□□□□ -1.21
SCN9A-202ENST00000409435 PTPN1P18031 435 aaKnown RBP7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms