RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 KIF19Q2TAC6 998 aa16.58■□□□□ 0.24
PCDH1-203ENST00000394536 PYROXD2Q8N2H3 581 aa16.58■□□□□ 0.24
PCDH1-203ENST00000394536 TDRD5Q8NAT2 981 aaKnown RBP16.58■□□□□ 0.24
PCDH1-203ENST00000394536 CELF6Q96J87 481 aaKnown RBP16.58■□□□□ 0.24
PCDH1-203ENST00000394536 SSX2IPQ9Y2D8 614 aa16.58■□□□□ 0.24
PCDH1-203ENST00000394536 LAMB1P07942 1786 aa16.58■□□□□ 0.24
PCDH1-203ENST00000394536 XPO1O14980 1071 aaKnown RBP16.58■□□□□ 0.24
PCDH1-203ENST00000394536 GAS2O43903 313 aaKnown RBP16.58■□□□□ 0.24
PCDH1-203ENST00000394536 TPST1O60507 370 aa16.58■□□□□ 0.24
PCDH1-203ENST00000394536 TM7SF2O76062 418 aa16.58■□□□□ 0.24
PCDH1-203ENST00000394536 TGFB3P10600 412 aa16.58■□□□□ 0.24
PCDH1-203ENST00000394536 IREB2P48200 963 aaKnown RBP16.58■□□□□ 0.24
PCDH1-203ENST00000394536 HABP4Q5JVS0 413 aaKnown RBP16.58■□□□□ 0.24
PCDH1-203ENST00000394536 TRIM67Q6ZTA4 783 aa16.58■□□□□ 0.24
PCDH1-203ENST00000394536 VPS33BQ9H267 617 aa16.58■□□□□ 0.24
PCDH1-203ENST00000394536 WDR55Q9H6Y2 383 aaPredicted RBP16.58■□□□□ 0.24
PCDH1-203ENST00000394536 DDIT4Q9NX09 232 aa16.58■□□□□ 0.24
PCDH1-203ENST00000394536 FARP1Q9Y4F1 1045 aaPredicted RBP16.58■□□□□ 0.24
PCDH1-203ENST00000394536 GMPRP36959 345 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 FDFT1P37268 417 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 GP5P40197 560 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 NAGLUP54802 743 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 STX1BP61266 288 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 NET1Q7Z628 596 aaPredicted RBP16.57■□□□□ 0.24
PCDH1-203ENST00000394536 ZSCAN18Q8TBC5 510 aaPredicted RBP16.57■□□□□ 0.24
PCDH1-203ENST00000394536 FNIP1Q8TF40 1166 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 PRDM12Q9H4Q4 367 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 MINDY3Q9H8M7 445 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 PDGFCQ9NRA1 345 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 DDX18Q9NVP1 670 aaKnown RBP16.57■□□□□ 0.24
PCDH1-203ENST00000394536 KIAA1257Q9ULG3 409 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 CILPO75339 1184 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 SERPINA6P08185 405 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 ITGA2BP08514 1039 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 LINGO3P0C6S8 592 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 TFE3P19532 575 aaPredicted RBP16.57■□□□□ 0.24
PCDH1-203ENST00000394536 ADIGQ0VDE8 80 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 SLC12A1Q13621 1099 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 PCSK7Q16549 785 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 ANKRD20A4Q4UJ75 823 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 KYAT3Q6YP21 454 aaKnown RBP16.57■□□□□ 0.24
PCDH1-203ENST00000394536 FBXO27Q8NI29 283 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 TNIP3Q96KP6 325 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 PEBP4Q96S96 227 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 TBCBQ99426 244 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 CHST12Q9NRB3 414 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 LNPEPQ9UIQ6 1025 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 RUVBL2Q9Y230 463 aaKnown RBP16.57■□□□□ 0.24
PCDH1-203ENST00000394536 AK5Q9Y6K8 562 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 SLC15A5A6NIM6 579 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 PAPSS1O43252 624 aaPredicted RBP16.57■□□□□ 0.24
PCDH1-203ENST00000394536 PMPCBO75439 489 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 TGDSO95455 350 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 EPHA3P29320 983 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 GPD2P43304 727 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 SLC18A1P54219 525 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 MPP3Q13368 585 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 TREML2Q5T2D2 321 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 LRRC8EQ6NSJ5 796 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 DPY19L2Q6NUT2 758 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 IFNEQ86WN2 208 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 CHSY1Q86X52 802 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 SPATA6LQ8N4H0 392 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 AZIN2Q96A70 460 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 ATXN3LQ9H3M9 355 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 RPL26L1Q9UNX3 145 aaKnown RBP16.57■□□□□ 0.24
PCDH1-203ENST00000394536 AURKCQ9UQB9 309 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 TIMM13Q9Y5L4 95 aaPredicted RBP16.57■□□□□ 0.24
PCDH1-203ENST00000394536 TEX264Q9Y6I9 313 aa16.57■□□□□ 0.24
PCDH1-203ENST00000394536 SHANK3Q9BYB0 1731 aa16.56■□□□□ 0.24
PCDH1-203ENST00000394536 GIPC1O14908 333 aa16.56■□□□□ 0.24
PCDH1-203ENST00000394536 PEX1O43933 1283 aa16.56■□□□□ 0.24
PCDH1-203ENST00000394536 B4GALT4O60513 344 aa16.56■□□□□ 0.24
PCDH1-203ENST00000394536 EDN1P05305 212 aa16.56■□□□□ 0.24
PCDH1-203ENST00000394536 LYNP07948 512 aa16.56■□□□□ 0.24
PCDH1-203ENST00000394536 ATICP31939 592 aa16.56■□□□□ 0.24
PCDH1-203ENST00000394536 CACNB2Q08289 660 aaPredicted RBP16.56■□□□□ 0.24
PCDH1-203ENST00000394536 OR6Y1Q8NGX8 325 aa16.56■□□□□ 0.24
PCDH1-203ENST00000394536 ZNF483Q8TF39 744 aaPredicted RBP16.56■□□□□ 0.24
PCDH1-203ENST00000394536 FAM136AQ96C01 138 aa16.56■□□□□ 0.24
PCDH1-203ENST00000394536 LRRC39Q96DD0 335 aa16.56■□□□□ 0.24
PCDH1-203ENST00000394536 OSMRQ99650 979 aa16.56■□□□□ 0.24
PCDH1-203ENST00000394536 DNAJC5Q9H3Z4 198 aa16.56■□□□□ 0.24
PCDH1-203ENST00000394536 ASB7Q9H672 318 aa16.56■□□□□ 0.24
PCDH1-203ENST00000394536 SSU72Q9NP77 194 aaKnown RBP16.56■□□□□ 0.24
PCDH1-203ENST00000394536 PPM1HQ9ULR3 514 aa16.56■□□□□ 0.24
PCDH1-203ENST00000394536 ITM2AO43736 263 aa16.56■□□□□ 0.24
PCDH1-203ENST00000394536 ARF4P18085 180 aaPredicted RBP16.56■□□□□ 0.24
PCDH1-203ENST00000394536 CCNA1P78396 465 aa16.56■□□□□ 0.24
PCDH1-203ENST00000394536 KRT72Q14CN4 511 aa16.56■□□□□ 0.24
PCDH1-203ENST00000394536 PTAR1Q7Z6K3 402 aaPredicted RBP16.56■□□□□ 0.24
PCDH1-203ENST00000394536 MRPL45Q9BRJ2 306 aaKnown RBP16.56■□□□□ 0.24
PCDH1-203ENST00000394536 MAGEB5Q9BZ81 275 aa16.56■□□□□ 0.24
PCDH1-203ENST00000394536 LRRC40Q9H9A6 602 aa16.56■□□□□ 0.24
PCDH1-203ENST00000394536 COPS7BQ9H9Q2 264 aaPredicted RBP16.56■□□□□ 0.24
PCDH1-203ENST00000394536 PLEKHA5Q9HAU0 1116 aa16.56■□□□□ 0.24
PCDH1-203ENST00000394536 VANGL2Q9ULK5 521 aa16.56■□□□□ 0.24
PCDH1-203ENST00000394536 RNF103-CHMP3A0A140T963 221 aa16.56■□□□□ 0.24
PCDH1-203ENST00000394536 C2CD4BA6NLJ0 364 aa16.56■□□□□ 0.24
PCDH1-203ENST00000394536 CLEC4CQ8WTT0 213 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms