RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 SPATA31C2B4DYI2 1134 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 SLC11A2P49281 568 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 CDH6P55285 790 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 ZNF599Q96NL3 588 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 FAM213AQ9BRX8 229 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 ZCCHC11Q5TAX3 1644 aaKnown RBP5.06□□□□□ -1.6
PCDH9-201ENST00000377861 BCL9O00512 1426 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 SYNDIG1LA6NDD5 238 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 TTPAP49638 278 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 DHFR2Q86XF0 187 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 SVOPLQ8N434 492 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 PAPSS1O43252 624 aaPredicted RBP5.06□□□□□ -1.6
PCDH9-201ENST00000377861 DGUOKQ16854 277 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 TMEM110-MUSTN1A8MSY1 372 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 ATP5F1P24539 256 aaPredicted RBP5.06□□□□□ -1.6
PCDH9-201ENST00000377861 TMEM161BQ8NDZ6 487 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 TCF7L2Q9NQB0 619 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP5.06□□□□□ -1.6
PCDH9-201ENST00000377861 MYO5CQ9NQX4 1742 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 SOBPA7XYQ1 873 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 ACTR3P61158 418 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 TP53INP1Q96A56 240 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 PACSIN1Q9BY11 444 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 ADAM30Q9UKF2 790 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 UBIAD1Q9Y5Z9 338 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 CPS1P31327 1500 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 PABPC4LP0CB38 370 aaKnown RBP5.06□□□□□ -1.6
PCDH9-201ENST00000377861 SWSAP1Q6NVH7 229 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 HIPK1Q86Z02 1210 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 AHI1Q8N157 1196 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 EMILIN2Q9BXX0 1053 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 CAAP1Q9H8G2 361 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 SCAF8Q9UPN6 1271 aaKnown RBP5.06□□□□□ -1.6
PCDH9-201ENST00000377861 SNX2O60749 519 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 VCAM1P19320 739 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 TSHZ1Q6ZSZ6 1077 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 CGRRF1Q99675 332 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 MAGED1Q9Y5V3 778 aaPredicted RBP5.06□□□□□ -1.6
PCDH9-201ENST00000377861 MED26O95402 600 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 PIK3CBP42338 1070 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 SPOCD1Q6ZMY3 1216 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 KIAA0895Q8NCT3 520 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 TRPS1Q9UHF7 1281 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 USP21Q9UK80 565 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 SLC45A1Q9Y2W3 748 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 INO80Q9ULG1 1556 aaPredicted RBP5.06□□□□□ -1.6
PCDH9-201ENST00000377861 LRRC8DQ7L1W4 858 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 MTDHQ86UE4 582 aaKnown RBP5.06□□□□□ -1.6
PCDH9-201ENST00000377861 GGA3Q9NZ52 723 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 COL1A2P08123 1366 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 CENPXA8MT69 81 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 TFEBP19484 476 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 TIE1P35590 1138 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 TRIM68Q6AZZ1 485 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 C3orf67Q6ZVT6 689 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 WDCPQ9H6R7 721 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 ADGRE2Q9UHX3 823 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 GH2P01242 217 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 HNRNPCP07910 306 aaKnown RBP eCLIP5.06□□□□□ -1.6
PCDH9-201ENST00000377861 WARSP23381 471 aaKnown RBP5.06□□□□□ -1.6
PCDH9-201ENST00000377861 USP10Q14694 798 aaKnown RBP5.06□□□□□ -1.6
PCDH9-201ENST00000377861 CARNMT1Q8N4J0 409 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 H0YGN5 161 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 OATP04181 439 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 PTPN9P43378 593 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 RPL10AP62906 217 aaKnown RBP5.06□□□□□ -1.6
PCDH9-201ENST00000377861 ATF7IP2Q5U623 682 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 DCLRE1AQ6PJP8 1040 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 CPNE9Q8IYJ1 553 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 NFS1Q9Y697 457 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 CCNA2P20248 432 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 CAPZA1P52907 286 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 C2orf54Q08AI8 447 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 ACAP2Q15057 778 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 STAMQ92783 540 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 EPB41L4BQ9H329 900 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 CENPBD1B2RD01 187 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 SLC9A1P19634 815 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 ADRA1DP25100 572 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 DNAJB13P59910 316 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 DMPKQ09013 629 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 SLC25A52Q3SY17 297 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 HP1BP3Q5SSJ5 553 aaPredicted RBP5.06□□□□□ -1.6
PCDH9-201ENST00000377861 SEPT8Q92599 483 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 HAPLN3Q96S86 360 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 B3GNT3Q9Y2A9 372 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 USTQ9Y2C2 406 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 WDR37Q9Y2I8 494 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 DISP2A7MBM2 1401 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 GPD1P21695 349 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 CCR1P32246 355 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 RNASE9P60153 205 aaKnown RBP5.06□□□□□ -1.6
PCDH9-201ENST00000377861 TRIM60Q495X7 471 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 SPANXN2Q5MJ10 180 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 NSMFQ6X4W1 530 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 CRYBG2Q8N1P7 616 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 TOR1AIP2Q8NFQ8 470 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 TSGA13Q96PP4 275 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 RPS6KA6Q9UK32 745 aa5.06□□□□□ -1.6
PCDH9-201ENST00000377861 ALDH1A1P00352 501 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms