RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 UBE2Q1Q7Z7E8 422 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 GRAMD1AQ96CP6 724 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 MCRS1Q96EZ8 462 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 PSMD1Q99460 953 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 MAGEB5Q9BZ81 275 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 TMEM8AQ9HCN3 771 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 FSCN3Q9NQT6 498 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 UTS2RQ9UKP6 389 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 PCDHA12Q9UN75 941 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 MAN2B2Q9Y2E5 1009 aa2.56□□□□□ -2
VPS13A-206ENST00000376646 A0A1W2PPC4 97 aa2.55□□□□□ -2
VPS13A-206ENST00000376646 CLCA1A8K7I4 914 aa2.55□□□□□ -2
VPS13A-206ENST00000376646 CTIFO43310 598 aaKnown RBP2.55□□□□□ -2
VPS13A-206ENST00000376646 TPD52L2O43399 206 aaKnown RBP2.55□□□□□ -2
VPS13A-206ENST00000376646 NCK2O43639 380 aa2.55□□□□□ -2
VPS13A-206ENST00000376646 TLX3O43711 291 aaPredicted RBP2.55□□□□□ -2
VPS13A-206ENST00000376646 KAT7O95251 611 aa2.55□□□□□ -2
VPS13A-206ENST00000376646 SLC3A2P08195 630 aaKnown RBP2.55□□□□□ -2
VPS13A-206ENST00000376646 IFIT2P09913 472 aaKnown RBP2.55□□□□□ -2
VPS13A-206ENST00000376646 CHRNB1P11230 501 aa2.55□□□□□ -2
VPS13A-206ENST00000376646 MYL4P12829 197 aa2.55□□□□□ -2
VPS13A-206ENST00000376646 GABRB3P28472 473 aa2.55□□□□□ -2
VPS13A-206ENST00000376646 DUSP1P28562 367 aa2.55□□□□□ -2
VPS13A-206ENST00000376646 IL6STP40189 918 aaPredicted RBP2.55□□□□□ -2
VPS13A-206ENST00000376646 PMS2P11Q13670 270 aa2.55□□□□□ -2
VPS13A-206ENST00000376646 ERV3-1Q14264 604 aa2.55□□□□□ -2
VPS13A-206ENST00000376646 SMTNL2Q2TAL5 461 aa2.55□□□□□ -2
VPS13A-206ENST00000376646 ZNF585BQ52M93 769 aa2.55□□□□□ -2
VPS13A-206ENST00000376646 CCDC144NLQ6NUI1 221 aa2.55□□□□□ -2
VPS13A-206ENST00000376646 CLASRPQ8N2M8 674 aaKnown RBP2.55□□□□□ -2
VPS13A-206ENST00000376646 GLIS1Q8NBF1 620 aa2.55□□□□□ -2
VPS13A-206ENST00000376646 GJA10Q969M2 543 aa2.55□□□□□ -2
VPS13A-206ENST00000376646 PIMREGQ9BSJ6 248 aa2.55□□□□□ -2
VPS13A-206ENST00000376646 TTLL2Q9BWV7 592 aa2.55□□□□□ -2
VPS13A-206ENST00000376646 NAA15Q9BXJ9 866 aaKnown RBP2.55□□□□□ -2
VPS13A-206ENST00000376646 ZCWPW1Q9H0M4 648 aa2.55□□□□□ -2
VPS13A-206ENST00000376646 CDCP1Q9H5V8 836 aa2.55□□□□□ -2
VPS13A-206ENST00000376646 MRPL44Q9H9J2 332 aaKnown RBP2.55□□□□□ -2
VPS13A-206ENST00000376646 THSD1Q9NS62 852 aa2.55□□□□□ -2
VPS13A-206ENST00000376646 TMOD4Q9NZQ9 345 aa2.55□□□□□ -2
VPS13A-206ENST00000376646 MYO1AQ9UBC5 1043 aa2.55□□□□□ -2
VPS13A-206ENST00000376646 B3GNT3Q9Y2A9 372 aa2.55□□□□□ -2
VPS13A-206ENST00000376646 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP2.54□□□□□ -2
VPS13A-206ENST00000376646 ANO9A1A5B4 782 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 F8W810 466 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 APOL1O14791 398 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 AREL1O15033 823 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 KCNQ3O43525 872 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 ATG13O75143 517 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 SYF2O95926 243 aaKnown RBP2.54□□□□□ -2
VPS13A-206ENST00000376646 HARSP12081 509 aaKnown RBP2.54□□□□□ -2
VPS13A-206ENST00000376646 HOXB2P14652 356 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 GSTM5P46439 218 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 SLC12A2P55011 1212 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 DMWDQ09019 674 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 OS9Q13438 667 aaPredicted RBP2.54□□□□□ -2
VPS13A-206ENST00000376646 SEMA3AQ14563 771 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 EEF1AKMT2Q5JPI9 291 aaKnown RBP2.54□□□□□ -2
VPS13A-206ENST00000376646 MRNIPQ6NTE8 343 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 ACSM6Q6P461 480 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 P2RY11Q96G91 374 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 SENP7Q9BQF6 1050 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 DDX24Q9GZR7 859 aaKnown RBP eCLIP2.54□□□□□ -2
VPS13A-206ENST00000376646 ZNF700Q9H0M5 742 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 EPS8L2Q9H6S3 715 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 ANAPC4Q9UJX5 808 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 PROCRQ9UNN8 238 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 PCDHB7Q9Y5E2 793 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 NOTCH4Q99466 2003 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 FAM234BA2RU67 622 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 FAM90A8PA6NJQ4 464 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 M0QYT0 321 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 RFPL3SP0C7P2 107 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 FAM90A13PP0C7W8 464 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 FAM90A24PP0C7X0 464 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 SRGAP2BP0DMP2 458 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 RPL17P18621 184 aaKnown RBP2.54□□□□□ -2
VPS13A-206ENST00000376646 SLC8A1P32418 973 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 PTGR1Q14914 329 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 INPP5JQ15735 1006 aaPredicted RBP2.54□□□□□ -2
VPS13A-206ENST00000376646 UBAP2Q5T6F2 1119 aaKnown RBP2.54□□□□□ -2
VPS13A-206ENST00000376646 LIPMQ5VYY2 423 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 TTLL5Q6EMB2 1281 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 HIBCHQ6NVY1 386 aaPredicted RBP2.54□□□□□ -2
VPS13A-206ENST00000376646 SKAP1Q86WV1 359 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 UEVLDQ8IX04 471 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 SAMD3Q8N6K7 520 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 RBMXL3Q8N7X1 1067 aaKnown RBP2.54□□□□□ -2
VPS13A-206ENST00000376646 SLC44A5Q8NCS7 719 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 CCDC150Q8NCX0 1101 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 OR52L2PQ8NGH6 319 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 MPLKIPQ8TAP9 179 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 ZNF845Q96IR2 970 aaPredicted RBP2.54□□□□□ -2
VPS13A-206ENST00000376646 LYZL4Q96KX0 146 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 EIF3CQ99613 913 aaKnown RBP2.54□□□□□ -2
VPS13A-206ENST00000376646 TUBB6Q9BUF5 446 aa2.54□□□□□ -2
VPS13A-206ENST00000376646 PAPOLBQ9NRJ5 636 aaKnown RBP2.54□□□□□ -2
VPS13A-206ENST00000376646 MTPAPQ9NVV4 582 aaKnown RBP eCLIP2.54□□□□□ -2
VPS13A-206ENST00000376646 AGO2Q9UKV8 859 aaKnown RBP2.54□□□□□ -2
VPS13A-206ENST00000376646 PHTF1Q9UMS5 762 aa2.54□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms