RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 YWHAZP63104 245 aaKnown RBP22.55■■□□□ 1.2
CCDC28B-201ENST00000373602 CT47A1Q5JQC4 288 aaPredicted RBP22.55■■□□□ 1.2
CCDC28B-201ENST00000373602 PEAR1Q5VY43 1037 aaPredicted RBP22.55■■□□□ 1.2
CCDC28B-201ENST00000373602 NADSYN1Q6IA69 706 aa22.55■■□□□ 1.2
CCDC28B-201ENST00000373602 DPY19L2P1Q6NXN4 242 aa22.55■■□□□ 1.2
CCDC28B-201ENST00000373602 CHST9Q7L1S5 443 aa22.55■■□□□ 1.2
CCDC28B-201ENST00000373602 TAC4Q86UU9 113 aa22.55■■□□□ 1.2
CCDC28B-201ENST00000373602 WDTC1Q8N5D0 677 aa22.55■■□□□ 1.2
CCDC28B-201ENST00000373602 DDX50Q9BQ39 737 aaKnown RBP22.55■■□□□ 1.2
CCDC28B-201ENST00000373602 TUBGCP2Q9BSJ2 902 aa22.55■■□□□ 1.2
CCDC28B-201ENST00000373602 MKRN2Q9H000 416 aaKnown RBP22.55■■□□□ 1.2
CCDC28B-201ENST00000373602 POPDC2Q9HBU9 364 aa22.55■■□□□ 1.2
CCDC28B-201ENST00000373602 ABCB8Q9NUT2 735 aa22.55■■□□□ 1.2
CCDC28B-201ENST00000373602 GGA2Q9UJY4 613 aa22.55■■□□□ 1.2
CCDC28B-201ENST00000373602 PILRBQ9UKJ0 227 aa22.55■■□□□ 1.2
CCDC28B-201ENST00000373602 SPTBN2O15020 2390 aa22.55■■□□□ 1.2
CCDC28B-201ENST00000373602 NCOR2Q9Y618 2525 aa22.55■■□□□ 1.2
CCDC28B-201ENST00000373602 SYNCRIPO60506 623 aaKnown RBP22.54■■□□□ 1.2
CCDC28B-201ENST00000373602 TBL1XO60907 577 aa22.54■■□□□ 1.2
CCDC28B-201ENST00000373602 PABPC1P11940 636 aaKnown RBP22.54■■□□□ 1.2
CCDC28B-201ENST00000373602 ITPKAP23677 461 aa22.54■■□□□ 1.2
CCDC28B-201ENST00000373602 PRKCHP24723 683 aa22.54■■□□□ 1.2
CCDC28B-201ENST00000373602 HOXD12P35452 270 aa22.54■■□□□ 1.2
CCDC28B-201ENST00000373602 IRX4P78413 519 aa22.54■■□□□ 1.2
CCDC28B-201ENST00000373602 ARID5AQ03989 594 aa22.54■■□□□ 1.2
CCDC28B-201ENST00000373602 PTK2Q05397 1052 aa22.54■■□□□ 1.2
CCDC28B-201ENST00000373602 TRIM61Q5EBN2 209 aa22.54■■□□□ 1.2
CCDC28B-201ENST00000373602 KIAA1324Q6UXG2 1013 aaKnown RBP22.54■■□□□ 1.2
CCDC28B-201ENST00000373602 ADIPOR2Q86V24 386 aa22.54■■□□□ 1.2
CCDC28B-201ENST00000373602 AHI1Q8N157 1196 aa22.54■■□□□ 1.2
CCDC28B-201ENST00000373602 DEFB119Q8N690 84 aa22.54■■□□□ 1.2
CCDC28B-201ENST00000373602 ZNF557Q8N988 423 aaPredicted RBP22.54■■□□□ 1.2
CCDC28B-201ENST00000373602 ADAM32Q8TC27 787 aa22.54■■□□□ 1.2
CCDC28B-201ENST00000373602 WFDC5Q8TCV5 224 aa22.54■■□□□ 1.2
CCDC28B-201ENST00000373602 LHX5Q9H2C1 402 aa22.54■■□□□ 1.2
CCDC28B-201ENST00000373602 PRDM16Q9HAZ2 1276 aa22.54■■□□□ 1.2
CCDC28B-201ENST00000373602 CD93Q9NPY3 652 aa22.54■■□□□ 1.2
CCDC28B-201ENST00000373602 TJP2Q9UDY2 1190 aa22.54■■□□□ 1.2
CCDC28B-201ENST00000373602 C4orf47A7E2U8 309 aa22.53■■□□□ 1.2
CCDC28B-201ENST00000373602 FOXN3O00409 490 aaPredicted RBP22.53■■□□□ 1.2
CCDC28B-201ENST00000373602 IGLV3-25P01717 112 aa22.53■■□□□ 1.2
CCDC28B-201ENST00000373602 ADRB1P08588 477 aa22.53■■□□□ 1.2
CCDC28B-201ENST00000373602 CLCN1P35523 988 aa22.53■■□□□ 1.2
CCDC28B-201ENST00000373602 ZNF33AQ06730 810 aa22.53■■□□□ 1.2
CCDC28B-201ENST00000373602 HSP90AA4PQ58FG1 418 aa22.53■■□□□ 1.2
CCDC28B-201ENST00000373602 SERPINA13PQ6UXR4 307 aa22.53■■□□□ 1.2
CCDC28B-201ENST00000373602 TMPRSS6Q8IU80 811 aa22.53■■□□□ 1.2
CCDC28B-201ENST00000373602 HJURPQ8NCD3 748 aaPredicted RBP22.53■■□□□ 1.2
CCDC28B-201ENST00000373602 PRICKLE1Q96MT3 831 aaPredicted RBP22.53■■□□□ 1.2
CCDC28B-201ENST00000373602 CPXM1Q96SM3 734 aa22.53■■□□□ 1.2
CCDC28B-201ENST00000373602 LSM14BQ9BX40 385 aaKnown RBP22.53■■□□□ 1.2
CCDC28B-201ENST00000373602 CKAP5Q14008 2032 aa22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 GON4LQ3T8J9 2241 aa22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 KCNJ18B7U540 433 aa22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 TRUB2O95900 331 aaKnown RBP22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 EPHX1P07099 455 aa22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 GLI1P08151 1106 aa22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 COPAP53621 1224 aa22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 KCNMA1Q12791 1236 aa22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 KCNJ12Q14500 433 aa22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 TAF5Q15542 800 aa22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 MS4A13Q5J8X5 152 aa22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 MBLAC2Q68D91 279 aa22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 SLC23A3Q6PIS1 610 aa22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 PASD1Q8IV76 773 aa22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 SLC41A1Q8IVJ1 513 aa22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 FIBINQ8TAL6 211 aa22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 CYB5D2Q8WUJ1 264 aa22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 ZNF419Q96HQ0 510 aaPredicted RBP22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 PPP1R13BQ96KQ4 1090 aa22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 LMLNQ96KR4 655 aa22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 NUCKS1Q9H1E3 243 aaKnown RBP22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 TMEM245Q9H330 911 aa22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 TMEM9BQ9NQ34 198 aa22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 ITM2CQ9NQX7 267 aa22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 SAMSN1Q9NSI8 373 aaKnown RBP22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 ASNSD1Q9NWL6 643 aa22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 USP36Q9P275 1121 aaKnown RBP22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 PLA2G4CQ9UP65 541 aa22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 CEP192Q8TEP8 1941 aa22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 ATXN2Q99700 1313 aaKnown RBP22.52■■□□□ 1.2
CCDC28B-201ENST00000373602 CDX4O14627 284 aaPredicted RBP22.51■■□□□ 1.19
CCDC28B-201ENST00000373602 NDUFS2O75306 463 aa22.51■■□□□ 1.19
CCDC28B-201ENST00000373602 APOEP02649 317 aa22.51■■□□□ 1.19
CCDC28B-201ENST00000373602 HLA-EP13747 358 aa22.51■■□□□ 1.19
CCDC28B-201ENST00000373602 CD6P30203 668 aa22.51■■□□□ 1.19
CCDC28B-201ENST00000373602 CD70P32970 193 aa22.51■■□□□ 1.19
CCDC28B-201ENST00000373602 RPS24P62847 133 aaKnown RBP22.51■■□□□ 1.19
CCDC28B-201ENST00000373602 LMAN2Q12907 356 aa22.51■■□□□ 1.19
CCDC28B-201ENST00000373602 EIF4EBP2Q13542 120 aaPredicted RBP22.51■■□□□ 1.19
CCDC28B-201ENST00000373602 PTPRNQ16849 979 aa22.51■■□□□ 1.19
CCDC28B-201ENST00000373602 ZC3H12AQ5D1E8 599 aaKnown RBP22.51■■□□□ 1.19
CCDC28B-201ENST00000373602 SLC47A2Q86VL8 602 aa22.51■■□□□ 1.19
CCDC28B-201ENST00000373602 MFN1Q8IWA4 741 aa22.51■■□□□ 1.19
CCDC28B-201ENST00000373602 FAM71AQ8IYT1 594 aa22.51■■□□□ 1.19
CCDC28B-201ENST00000373602 MYEOVQ96EZ4 313 aa22.51■■□□□ 1.19
CCDC28B-201ENST00000373602 SIPA1Q96FS4 1042 aa22.51■■□□□ 1.19
CCDC28B-201ENST00000373602 NOX5Q96PH1 765 aa22.51■■□□□ 1.19
CCDC28B-201ENST00000373602 NUSAP1Q9BXS6 441 aaKnown RBP22.51■■□□□ 1.19
CCDC28B-201ENST00000373602 STIM2Q9P246 746 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms