RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 GJD2Q9UKL4 321 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 ADAMTS6Q9UKP5 1117 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 PSMD13Q9UNM6 376 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 GNEQ9Y223 722 aaKnown RBP16.36■□□□□ 0.21
HMGA1-202ENST00000347617 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.35■□□□□ 0.21
HMGA1-202ENST00000347617 TCRBV7S3A2A0A539 114 aa16.35■□□□□ 0.21
HMGA1-202ENST00000347617 RFPL1O75677 317 aa16.35■□□□□ 0.21
HMGA1-202ENST00000347617 VNN1O95497 513 aa16.35■□□□□ 0.21
HMGA1-202ENST00000347617 C1QAP02745 245 aa16.35■□□□□ 0.21
HMGA1-202ENST00000347617 CFHP08603 1231 aa16.35■□□□□ 0.21
HMGA1-202ENST00000347617 SRGAP2CP0DJJ0 459 aa16.35■□□□□ 0.21
HMGA1-202ENST00000347617 GRK2P25098 689 aa16.35■□□□□ 0.21
HMGA1-202ENST00000347617 MAGEA6P43360 314 aa16.35■□□□□ 0.21
HMGA1-202ENST00000347617 MRPS5P82675 430 aaKnown RBP16.35■□□□□ 0.21
HMGA1-202ENST00000347617 FSCBQ5H9T9 825 aa16.35■□□□□ 0.21
HMGA1-202ENST00000347617 FAM47CQ5HY64 1035 aa16.35■□□□□ 0.21
HMGA1-202ENST00000347617 KBTBD6Q86V97 674 aa16.35■□□□□ 0.21
HMGA1-202ENST00000347617 UNC45BQ8IWX7 931 aa16.35■□□□□ 0.21
HMGA1-202ENST00000347617 LRRC71Q8N4P6 559 aa16.35■□□□□ 0.21
HMGA1-202ENST00000347617 PPM1NQ8N819 430 aa16.35■□□□□ 0.21
HMGA1-202ENST00000347617 TRPC4APQ8TEL6 797 aa16.35■□□□□ 0.21
HMGA1-202ENST00000347617 DIS3LQ8TF46 1054 aaKnown RBP16.35■□□□□ 0.21
HMGA1-202ENST00000347617 PYDC1Q8WXC3 89 aa16.35■□□□□ 0.21
HMGA1-202ENST00000347617 HAPLN2Q9GZV7 340 aa16.35■□□□□ 0.21
HMGA1-202ENST00000347617 PTPRHQ9HD43 1115 aa16.35■□□□□ 0.21
HMGA1-202ENST00000347617 PRMT7Q9NVM4 692 aaPredicted RBP16.35■□□□□ 0.21
HMGA1-202ENST00000347617 TBCCD1Q9NVR7 557 aa16.35■□□□□ 0.21
HMGA1-202ENST00000347617 VILLO15195 856 aa16.34■□□□□ 0.21
HMGA1-202ENST00000347617 OGTO15294 1046 aa16.34■□□□□ 0.21
HMGA1-202ENST00000347617 ZNF865P0CJ78 1059 aaPredicted RBP16.34■□□□□ 0.21
HMGA1-202ENST00000347617 CCDC130P13994 396 aa16.34■□□□□ 0.21
HMGA1-202ENST00000347617 ALOX15P16050 662 aaPredicted RBP16.34■□□□□ 0.21
HMGA1-202ENST00000347617 PSMA2P25787 234 aa16.34■□□□□ 0.21
HMGA1-202ENST00000347617 PEX2P28328 305 aa16.34■□□□□ 0.21
HMGA1-202ENST00000347617 SERPINB6P35237 376 aa16.34■□□□□ 0.21
HMGA1-202ENST00000347617 PHKA2P46019 1235 aa16.34■□□□□ 0.21
HMGA1-202ENST00000347617 GABRB2P47870 512 aa16.34■□□□□ 0.21
HMGA1-202ENST00000347617 NLRP11P59045 1033 aaKnown RBP16.34■□□□□ 0.21
HMGA1-202ENST00000347617 OGDHQ02218 1023 aa16.34■□□□□ 0.21
HMGA1-202ENST00000347617 TBL3Q12788 808 aaKnown RBP16.34■□□□□ 0.21
HMGA1-202ENST00000347617 DLG1Q12959 904 aa16.34■□□□□ 0.21
HMGA1-202ENST00000347617 TUBB3Q13509 450 aa16.34■□□□□ 0.21
HMGA1-202ENST00000347617 DCTN2Q13561 401 aaKnown RBP16.34■□□□□ 0.21
HMGA1-202ENST00000347617 TFDP2Q14188 446 aa16.34■□□□□ 0.21
HMGA1-202ENST00000347617 MDH1BQ5I0G3 518 aa16.34■□□□□ 0.21
HMGA1-202ENST00000347617 RARS2Q5T160 578 aaKnown RBP16.34■□□□□ 0.21
HMGA1-202ENST00000347617 GJC2Q5T442 439 aaPredicted RBP16.34■□□□□ 0.21
HMGA1-202ENST00000347617 CDHR3Q6ZTQ4 885 aa16.34■□□□□ 0.21
HMGA1-202ENST00000347617 CTAGE3PQ8IX95 158 aa16.34■□□□□ 0.21
HMGA1-202ENST00000347617 FBXW8Q8N3Y1 598 aa16.34■□□□□ 0.21
HMGA1-202ENST00000347617 PPP1R14CQ8TAE6 165 aa16.34■□□□□ 0.21
HMGA1-202ENST00000347617 NMD3Q96D46 503 aaKnown RBP16.34■□□□□ 0.21
HMGA1-202ENST00000347617 RBAKQ9NYW8 714 aaPredicted RBP16.34■□□□□ 0.21
HMGA1-202ENST00000347617 PRPF19Q9UMS4 504 aaKnown RBP16.34■□□□□ 0.21
HMGA1-202ENST00000347617 TXNDC9O14530 226 aa16.33■□□□□ 0.21
HMGA1-202ENST00000347617 CA12O43570 354 aa16.33■□□□□ 0.21
HMGA1-202ENST00000347617 ALDH1A1P00352 501 aa16.33■□□□□ 0.21
HMGA1-202ENST00000347617 RBP3P10745 1247 aa16.33■□□□□ 0.21
HMGA1-202ENST00000347617 RAG1P15918 1043 aa16.33■□□□□ 0.21
HMGA1-202ENST00000347617 ALDH1A3P47895 512 aa16.33■□□□□ 0.21
HMGA1-202ENST00000347617 UBAP2LQ14157 1087 aaKnown RBP16.33■□□□□ 0.21
HMGA1-202ENST00000347617 KRT81Q14533 505 aa16.33■□□□□ 0.21
HMGA1-202ENST00000347617 KYAT1Q16773 422 aa16.33■□□□□ 0.21
HMGA1-202ENST00000347617 LPCAT4Q643R3 524 aa16.33■□□□□ 0.21
HMGA1-202ENST00000347617 RBM44Q6ZP01 1051 aaKnown RBP16.33■□□□□ 0.21
HMGA1-202ENST00000347617 CYS1Q717R9 158 aa16.33■□□□□ 0.21
HMGA1-202ENST00000347617 TMC7Q7Z402 723 aa16.33■□□□□ 0.21
HMGA1-202ENST00000347617 RFX6Q8HWS3 928 aa16.33■□□□□ 0.21
HMGA1-202ENST00000347617 CROCCP3Q8IVE0 287 aa16.33■□□□□ 0.21
HMGA1-202ENST00000347617 IGDCC3Q8IVU1 814 aa16.33■□□□□ 0.21
HMGA1-202ENST00000347617 BRSK2Q8IWQ3 736 aa16.33■□□□□ 0.21
HMGA1-202ENST00000347617 MCUQ8NE86 351 aa16.33■□□□□ 0.21
HMGA1-202ENST00000347617 PPP4R1Q8TF05 950 aa16.33■□□□□ 0.21
HMGA1-202ENST00000347617 ZBTB45Q96K62 511 aaPredicted RBP16.33■□□□□ 0.21
HMGA1-202ENST00000347617 SERPINI1Q99574 410 aa16.33■□□□□ 0.21
HMGA1-202ENST00000347617 APBA2Q99767 749 aa16.33■□□□□ 0.21
HMGA1-202ENST00000347617 GCOM2Q9BZD3 368 aaPredicted RBP16.33■□□□□ 0.21
HMGA1-202ENST00000347617 RBM38Q9H0Z9 239 aaKnown RBP16.33■□□□□ 0.21
HMGA1-202ENST00000347617 APOBEC3GQ9HC16 384 aaKnown RBP16.33■□□□□ 0.21
HMGA1-202ENST00000347617 CLIC5Q9NZA1 410 aa16.33■□□□□ 0.21
HMGA1-202ENST00000347617 HSFX1Q9UBD0 423 aa16.33■□□□□ 0.21
HMGA1-202ENST00000347617 ARHGAP26Q9UNA1 814 aa16.33■□□□□ 0.21
HMGA1-202ENST00000347617 POMPQ9Y244 141 aa16.33■□□□□ 0.21
HMGA1-202ENST00000347617 TNFSF13BQ9Y275 285 aa16.33■□□□□ 0.21
HMGA1-202ENST00000347617 CNTNAP2Q9UHC6 1331 aa16.33■□□□□ 0.21
HMGA1-202ENST00000347617 APOEP02649 317 aa16.33■□□□□ 0.2
HMGA1-202ENST00000347617 TFAP2AP05549 437 aa16.33■□□□□ 0.2
HMGA1-202ENST00000347617 NR1H2P55055 460 aa16.33■□□□□ 0.2
HMGA1-202ENST00000347617 RAB15P59190 212 aa16.33■□□□□ 0.2
HMGA1-202ENST00000347617 YWHAEP62258 255 aaKnown RBP16.33■□□□□ 0.2
HMGA1-202ENST00000347617 SLC25A3Q00325 362 aa16.33■□□□□ 0.2
HMGA1-202ENST00000347617 NOMO1Q15155 1222 aa16.33■□□□□ 0.2
HMGA1-202ENST00000347617 GRAMD1BQ3KR37 738 aa16.33■□□□□ 0.2
HMGA1-202ENST00000347617 TXNRD3NBQ6F5E7 133 aa16.33■□□□□ 0.2
HMGA1-202ENST00000347617 KLHDC10Q6PID8 442 aa16.33■□□□□ 0.2
HMGA1-202ENST00000347617 MPZL3Q6UWV2 235 aa16.33■□□□□ 0.2
HMGA1-202ENST00000347617 REM2Q8IYK8 340 aaPredicted RBP16.33■□□□□ 0.2
HMGA1-202ENST00000347617 PQLC1Q8N2U9 271 aa16.33■□□□□ 0.2
HMGA1-202ENST00000347617 SLC25A41Q8N5S1 370 aa16.33■□□□□ 0.2
HMGA1-202ENST00000347617 ADCY4Q8NFM4 1077 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms