RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 ACVR2BQ13705 512 aa12.75□□□□□ -0.37
SNRNP48-201ENST00000342415 APOBEC3FQ8IUX4 373 aaKnown RBP12.75□□□□□ -0.37
SNRNP48-201ENST00000342415 SYT15Q9BQS2 421 aa12.75□□□□□ -0.37
SNRNP48-201ENST00000342415 FRMD8P1Q9BZ68 369 aaPredicted RBP12.75□□□□□ -0.37
SNRNP48-201ENST00000342415 PRDM12Q9H4Q4 367 aa12.75□□□□□ -0.37
SNRNP48-201ENST00000342415 PLLPQ9Y342 182 aa12.75□□□□□ -0.37
SNRNP48-201ENST00000342415 SNCAIPQ9Y6H5 919 aa12.75□□□□□ -0.37
SNRNP48-201ENST00000342415 CNTNAP2Q9UHC6 1331 aa12.75□□□□□ -0.37
SNRNP48-201ENST00000342415 ARHGEF37A1IGU5 675 aa12.75□□□□□ -0.37
SNRNP48-201ENST00000342415 CXorf49A8MYA2 514 aaPredicted RBP12.75□□□□□ -0.37
SNRNP48-201ENST00000342415 FDFT1P37268 417 aa12.75□□□□□ -0.37
SNRNP48-201ENST00000342415 EMC10Q5UCC4 262 aa12.75□□□□□ -0.37
SNRNP48-201ENST00000342415 ATPAF2Q8N5M1 289 aa12.75□□□□□ -0.37
SNRNP48-201ENST00000342415 CHST13Q8NET6 341 aa12.75□□□□□ -0.37
SNRNP48-201ENST00000342415 DDX1Q92499 740 aaKnown RBP12.75□□□□□ -0.37
SNRNP48-201ENST00000342415 ACO2Q99798 780 aaKnown RBP12.75□□□□□ -0.37
SNRNP48-201ENST00000342415 EBNA1BP2Q99848 306 aaKnown RBP12.75□□□□□ -0.37
SNRNP48-201ENST00000342415 WDCPQ9H6R7 721 aa12.75□□□□□ -0.37
SNRNP48-201ENST00000342415 NRDE2Q9H7Z3 1164 aa12.75□□□□□ -0.37
SNRNP48-201ENST00000342415 SETD4Q9NVD3 440 aa12.75□□□□□ -0.37
SNRNP48-201ENST00000342415 CRYBG1Q9Y4K1 1723 aa12.75□□□□□ -0.37
SNRNP48-201ENST00000342415 LYPLA2O95372 231 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 IL10P22301 178 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 NEK3P51956 506 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 PPP1R26Q5T8A7 1209 aaPredicted RBP12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 BTBD8Q5XKL5 378 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 ANKS1BQ7Z6G8 1248 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 TMEM192Q8IY95 271 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 TTC39CQ8N584 583 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 BANPQ8N9N5 519 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 AZIN2Q96A70 460 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 IFT43Q96FT9 208 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 ANKRD27Q96NW4 1050 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 MAP3K20Q9NYL2 800 aaKnown RBP12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 FAM8A1Q9UBU6 413 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 HMGXB4Q9UGU5 601 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 ACOT9Q9Y305 439 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 TAF1P21675 1872 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 ZNF536O15090 1300 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 NCF1BA6NI72 391 aaPredicted RBP12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 TTC36A6NLP5 189 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 NCF1CA8MVU1 366 aaPredicted RBP12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 SPTLC1O15269 473 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 CYP2C9P11712 490 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 NCF1P14598 390 aaPredicted RBP12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 SERPINB8P50452 374 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 YWHAZP63104 245 aaKnown RBP12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 SLC6A3Q01959 620 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 TBCCQ15814 346 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 TTC33Q6PID6 262 aaPredicted RBP12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 ABHD15Q6UXT9 468 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 RMDN1Q96DB5 314 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 ZNF560Q96MR9 790 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 RGL2O15211 777 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 TMTC4Q5T4D3 741 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 DHDDSQ86SQ9 333 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 TMEM130Q8N3G9 435 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 PLD5Q8N7P1 536 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 PPHLN1Q8NEY8 458 aaKnown RBP12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 BHLHE22Q8NFJ8 381 aaPredicted RBP12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 OR6J1Q8NGC5 347 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 PBXIP1Q96AQ6 731 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 LPIN3Q9BQK8 851 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 NMRAL1Q9HBL8 299 aa12.74□□□□□ -0.37
SNRNP48-201ENST00000342415 CHADO15335 359 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 CHEK2O96017 543 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 PTPRAP18433 802 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 KLRC2P26717 231 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 PTPN7P35236 360 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 ROR2Q01974 943 aaKnown RBP12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 CCDC15Q0P6D6 951 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 PDK3Q15120 406 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 SIX1Q15475 284 aaPredicted RBP12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 ZBTB49Q6ZSB9 765 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 PYROXD2Q8N2H3 581 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 SNX31Q8N9S9 440 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 FAM156AQ8NDB6 213 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 ZNF398Q8TD17 642 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 FAM193BQ96PV7 902 aaPredicted RBP12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 TMEM79Q9BSE2 394 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 SPATC1LQ9H0A9 340 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 STX18Q9P2W9 335 aaKnown RBP12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 ROBO1Q9Y6N7 1651 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 C4AP0C0L4 1744 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 C4BP0C0L5 1744 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 BPGMP07738 259 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 LYNP07948 512 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 ITGA2BP08514 1039 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 CSH1P0DML2 217 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 CSH2P0DML3 217 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 KCNA2P16389 499 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 MMP14P50281 582 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 KCNMB4Q86W47 210 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 IGDCC3Q8IVU1 814 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 OPTNQ96CV9 577 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 SP110Q9HB58 689 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 PIDD1Q9HB75 910 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 BUD23O43709 281 aaKnown RBP12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 TKTL1P51854 596 aa12.73□□□□□ -0.37
SNRNP48-201ENST00000342415 ABCE1P61221 599 aaKnown RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms