RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 RTP4Q96DX8 246 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 STAMBPL1Q96FJ0 436 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 CELF6Q96J87 481 aaKnown RBP10.66□□□□□ -0.7
LIMA1-201ENST00000341247 HNRNPABQ99729 332 aaKnown RBP10.66□□□□□ -0.7
LIMA1-201ENST00000341247 ARMCX1Q9P291 453 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 KLHL8Q9P2G9 620 aaPredicted RBP10.66□□□□□ -0.7
LIMA1-201ENST00000341247 KANSL3Q9P2N6 904 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 NUDT5Q9UKK9 219 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 NUP205Q92621 2012 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 GCATO75600 419 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 ZFXP17010 805 aaPredicted RBP10.66□□□□□ -0.7
LIMA1-201ENST00000341247 SERPINB3P29508 390 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 ERFP50548 548 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 RASA2Q15283 850 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 CHI3L2Q15782 390 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 TRPV1Q8NER1 839 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 RNF34Q969K3 372 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 ALKBH8Q96BT7 664 aaKnown RBP10.66□□□□□ -0.7
LIMA1-201ENST00000341247 SMOQ99835 787 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 TRIM55Q9BYV6 548 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 ARHGAP39Q9C0H5 1083 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 FAM105AQ9NUU6 356 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 A0A0A0MRY4 1105 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 F8W810 466 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 HAS3O00219 553 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 ERVK-10P10266 1014 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 EPHB2P29323 1055 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 CPA2P48052 419 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 ARFIP2P53365 341 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 GDF6Q6KF10 455 aaPredicted RBP10.66□□□□□ -0.7
LIMA1-201ENST00000341247 STRADAQ7RTN6 431 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 GSTCDQ8NEC7 633 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 KCNV2Q8TDN2 545 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 USP33Q8TEY7 942 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 SPATA13Q96N96 652 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 TMEM120AQ9BXJ8 343 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 SIK2Q9H0K1 926 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 SYBUQ9NX95 663 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 STAP1Q9ULZ2 295 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 PSAT1Q9Y617 370 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 USP3Q9Y6I4 520 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 TRPM7Q96QT4 1865 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 GOLGA8TH3BQL2 631 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 H3BRJ5 948 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 FYNP06241 537 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 THP07101 528 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 SRGAP2BP0DMP2 458 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 ERCC2P18074 760 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 NOS2P35228 1153 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 ETV4P43268 484 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 SLC18A1P54219 525 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 TRIM32Q13049 653 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 RFX8Q6ZV50 586 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 HACE1Q8IYU2 909 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 ZNF567Q8N184 647 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 UTP4Q969X6 686 aaKnown RBP10.65□□□□□ -0.7
LIMA1-201ENST00000341247 PPP1R10Q96QC0 940 aaKnown RBP10.65□□□□□ -0.7
LIMA1-201ENST00000341247 PHACTR1Q9C0D0 580 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 VPS11Q9H270 941 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 AGO3Q9H9G7 860 aaKnown RBP10.65□□□□□ -0.7
LIMA1-201ENST00000341247 ARHGEF3Q9NR81 526 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 TXLNGQ9NUQ3 528 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 FETUBQ9UGM5 382 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 RANBP2P49792 3224 aaKnown RBP10.65□□□□□ -0.7
LIMA1-201ENST00000341247 HMX2A2RU54 273 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 DAB1O75553 588 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 SPAG6O75602 509 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 RFPL1O75677 317 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 DCTN3O75935 186 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 B3GAT3O94766 335 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 T-ENOLP0DO92 83 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 MYL2P10916 166 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 ALADP13716 330 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 WARSP23381 471 aaKnown RBP10.65□□□□□ -0.7
LIMA1-201ENST00000341247 BDNFP23560 247 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 NR2C2P49116 596 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 TPI1P60174 286 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 RGS9BPQ6ZS82 235 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 SH2D5Q6ZV89 423 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 FAM35AQ86V20 835 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 TOP6BLQ8N6T0 577 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 OR52K1Q8NGK4 314 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 NPY6RQ99463 290 aa10.65□□□□□ -0.7
LIMA1-201ENST00000341247 H0Y3Z8 333 aa10.65□□□□□ -0.71
LIMA1-201ENST00000341247 ATP9BO43861 1147 aa10.65□□□□□ -0.71
LIMA1-201ENST00000341247 KRT38O76015 456 aa10.65□□□□□ -0.71
LIMA1-201ENST00000341247 TPH1P17752 444 aa10.65□□□□□ -0.71
LIMA1-201ENST00000341247 MRPS6P82932 125 aaKnown RBP10.65□□□□□ -0.71
LIMA1-201ENST00000341247 SLC18A2Q05940 514 aa10.65□□□□□ -0.71
LIMA1-201ENST00000341247 BST1Q10588 318 aa10.65□□□□□ -0.71
LIMA1-201ENST00000341247 LGSNQ5TDP6 509 aa10.65□□□□□ -0.71
LIMA1-201ENST00000341247 CES4AQ5XG92 561 aa10.65□□□□□ -0.71
LIMA1-201ENST00000341247 ASRGL1Q7L266 308 aa10.65□□□□□ -0.71
LIMA1-201ENST00000341247 ALYREFQ86V81 257 aaKnown RBP10.65□□□□□ -0.71
LIMA1-201ENST00000341247 LONP2Q86WA8 852 aa10.65□□□□□ -0.71
LIMA1-201ENST00000341247 NUDCD3Q8IVD9 361 aa10.65□□□□□ -0.71
LIMA1-201ENST00000341247 ARID3BQ8IVW6 561 aaPredicted RBP10.65□□□□□ -0.71
LIMA1-201ENST00000341247 ZMIZ2Q8NF64 920 aa10.65□□□□□ -0.71
LIMA1-201ENST00000341247 PPP1R14CQ8TAE6 165 aa10.65□□□□□ -0.71
LIMA1-201ENST00000341247 TMEM209Q96SK2 561 aa10.65□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms