RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 TKTL1P51854 596 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 NEK3P51956 506 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 CACNA2D1P54289 1103 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 NAGLUP54802 743 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 SNX16P57768 344 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 AP2B1P63010 937 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 CTBP1Q13363 440 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 FKBP1CQ5VVH2 108 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 SHKBP1Q8TBC3 707 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 GPR152Q8TDT2 470 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 DIS3LQ8TF46 1054 aaKnown RBP12.28□□□□□ -0.44
USP1-201ENST00000339950 SYBUQ9NX95 663 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 ANGPTL2Q9UKU9 493 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 ADAMTSL1Q8N6G6 1762 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 USP2O75604 605 aaPredicted RBP12.28□□□□□ -0.44
USP1-201ENST00000339950 B3GAT3O94766 335 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 GRIK4Q16099 956 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 CYP2R1Q6VVX0 501 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 LDB1Q86U70 411 aaPredicted RBP12.28□□□□□ -0.44
USP1-201ENST00000339950 NAT8LQ8N9F0 302 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 ALKBH8Q96BT7 664 aaKnown RBP12.28□□□□□ -0.44
USP1-201ENST00000339950 FAM8A1Q9UBU6 413 aa12.28□□□□□ -0.44
USP1-201ENST00000339950 DRG1Q9Y295 367 aaKnown RBP12.28□□□□□ -0.44
USP1-201ENST00000339950 DCAF8L1A6NGE4 600 aa12.27□□□□□ -0.44
USP1-201ENST00000339950 SUPT3HO75486 399 aa12.27□□□□□ -0.44
USP1-201ENST00000339950 PSMG1O95456 288 aa12.27□□□□□ -0.44
USP1-201ENST00000339950 TPBGLP0DKB5 382 aa12.27□□□□□ -0.44
USP1-201ENST00000339950 GCAP28676 217 aa12.27□□□□□ -0.44
USP1-201ENST00000339950 GPD2P43304 727 aa12.27□□□□□ -0.44
USP1-201ENST00000339950 SLC6A3Q01959 620 aa12.27□□□□□ -0.44
USP1-201ENST00000339950 SOWAHAQ2M3V2 549 aa12.27□□□□□ -0.44
USP1-201ENST00000339950 TTC30AQ86WT1 665 aa12.27□□□□□ -0.44
USP1-201ENST00000339950 MIB1Q86YT6 1006 aa12.27□□□□□ -0.44
USP1-201ENST00000339950 HPS6Q86YV9 775 aa12.27□□□□□ -0.44
USP1-201ENST00000339950 TREML1Q86YW5 311 aa12.27□□□□□ -0.44
USP1-201ENST00000339950 PCDH20Q8N6Y1 951 aaKnown RBP12.27□□□□□ -0.44
USP1-201ENST00000339950 NKD2Q969F2 451 aaPredicted RBP12.27□□□□□ -0.44
USP1-201ENST00000339950 CNBD2Q96M20 576 aa12.27□□□□□ -0.44
USP1-201ENST00000339950 KCNK16Q96T55 309 aa12.27□□□□□ -0.44
USP1-201ENST00000339950 MIPEPQ99797 713 aa12.27□□□□□ -0.44
USP1-201ENST00000339950 SEMA6AQ9H2E6 1030 aa12.27□□□□□ -0.44
USP1-201ENST00000339950 PIDD1Q9HB75 910 aa12.27□□□□□ -0.44
USP1-201ENST00000339950 KRT82Q9NSB4 513 aa12.27□□□□□ -0.44
USP1-201ENST00000339950 PRG3Q9Y2Y8 225 aaPredicted RBP12.27□□□□□ -0.44
USP1-201ENST00000339950 TTC24A2A3L6 582 aaPredicted RBP12.27□□□□□ -0.45
USP1-201ENST00000339950 SCN7AQ01118 1682 aa12.27□□□□□ -0.45
USP1-201ENST00000339950 NSUN2Q08J23 767 aaKnown RBP eCLIP12.27□□□□□ -0.45
USP1-201ENST00000339950 PTP4A2Q12974 167 aa12.27□□□□□ -0.45
USP1-201ENST00000339950 RIPK1Q13546 671 aa12.27□□□□□ -0.45
USP1-201ENST00000339950 SLC45A4Q5BKX6 768 aa12.27□□□□□ -0.45
USP1-201ENST00000339950 DPY19L2Q6NUT2 758 aa12.27□□□□□ -0.45
USP1-201ENST00000339950 LBX2Q6XYB7 198 aa12.27□□□□□ -0.45
USP1-201ENST00000339950 TRIM42Q8IWZ5 723 aa12.27□□□□□ -0.45
USP1-201ENST00000339950 FOXP3Q9BZS1 431 aa12.27□□□□□ -0.45
USP1-201ENST00000339950 ZNF518BQ9C0D4 1074 aa12.27□□□□□ -0.45
USP1-201ENST00000339950 PLEKHA5Q9HAU0 1116 aa12.27□□□□□ -0.45
USP1-201ENST00000339950 SDR42E2A6NKP2 422 aa12.27□□□□□ -0.45
USP1-201ENST00000339950 MFSD11O43934 449 aa12.27□□□□□ -0.45
USP1-201ENST00000339950 CILPO75339 1184 aa12.27□□□□□ -0.45
USP1-201ENST00000339950 VAPBO95292 243 aa12.27□□□□□ -0.45
USP1-201ENST00000339950 MRPS22P82650 360 aaKnown RBP12.27□□□□□ -0.45
USP1-201ENST00000339950 SLC25A11Q02978 314 aaKnown RBP12.27□□□□□ -0.45
USP1-201ENST00000339950 DCAKDQ8WVC6 231 aa12.27□□□□□ -0.45
USP1-201ENST00000339950 LRGUKQ96M69 825 aa12.27□□□□□ -0.45
USP1-201ENST00000339950 NDNQ99608 321 aa12.27□□□□□ -0.45
USP1-201ENST00000339950 SPON2Q9BUD6 331 aa12.27□□□□□ -0.45
USP1-201ENST00000339950 ULBP1Q9BZM6 244 aa12.27□□□□□ -0.45
USP1-201ENST00000339950 XYLT2Q9H1B5 865 aa12.27□□□□□ -0.45
USP1-201ENST00000339950 CCDC134Q9H6E4 229 aa12.27□□□□□ -0.45
USP1-201ENST00000339950 XPNPEP3Q9NQH7 507 aa12.27□□□□□ -0.45
USP1-201ENST00000339950 XPO1O14980 1071 aaKnown RBP12.26□□□□□ -0.45
USP1-201ENST00000339950 IL18RAPO95256 599 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 SETSIPP0DME0 302 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 ANO4Q32M45 955 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 FBXO47Q5MNV8 452 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 TMEM198Q66K66 360 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 ILDR2Q71H61 639 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 ST13P4Q8IZP2 240 aaPredicted RBP12.26□□□□□ -0.45
USP1-201ENST00000339950 BANPQ8N9N5 519 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 B4GALNT2Q8NHY0 566 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 GAD1Q99259 594 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 A0A096LPK6 155 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 CCL15-CCL14A0A0B4J2E2 113 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 UBA6A0AVT1 1052 aaPredicted RBP12.26□□□□□ -0.45
USP1-201ENST00000339950 C2CD2LO14523 706 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 HNRNPLP14866 589 aaKnown RBP eCLIP12.26□□□□□ -0.45
USP1-201ENST00000339950 CPA3P15088 417 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 COPAP53621 1224 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 MAXP61244 160 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 CCL15Q16663 113 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 KIF19Q2TAC6 998 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 SPATA22Q8NHS9 363 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 SLC7A6OSQ96CW6 309 aaPredicted RBP12.26□□□□□ -0.45
USP1-201ENST00000339950 ELMO2Q96JJ3 720 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 OXCT2Q9BYC2 517 aaPredicted RBP12.26□□□□□ -0.45
USP1-201ENST00000339950 EBF2Q9HAK2 575 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 AURKCQ9UQB9 309 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 RUVBL2Q9Y230 463 aaKnown RBP12.26□□□□□ -0.45
USP1-201ENST00000339950 C2CD2Q9Y426 696 aa12.26□□□□□ -0.45
USP1-201ENST00000339950 NCF1BA6NI72 391 aaPredicted RBP12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms