RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 VTA1Q9NP79 307 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 TPRKBQ9Y3C4 175 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 SPDYE5A6NIY4 337 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 KBTBD13C9JR72 458 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 KRT20P35900 424 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 MGAT5Q09328 741 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 KRT33BQ14525 404 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 PDK4Q16654 411 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 AMHR2Q16671 573 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 SPDYE7PQ495Y7 208 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 ATP6AP1LQ52LC2 224 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 FAM98BQ52LJ0 330 aaKnown RBP11.78□□□□□ -0.52
VPS39-201ENST00000318006 EXOC3L1Q86VI1 746 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 HAS1Q92839 578 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 NSMCE2Q96MF7 247 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 CLEC4MQ9H2X3 399 aaPredicted RBP11.78□□□□□ -0.52
VPS39-201ENST00000318006 CYP3A43Q9HB55 503 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 COMMD8Q9NX08 183 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 IPPQ9Y573 584 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 A0A087WZ62 844 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 DDX3XO00571 662 aaKnown RBP eCLIP11.78□□□□□ -0.521e-8■■■□□ 16.8
VPS39-201ENST00000318006 DPYSL4O14531 572 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 CXCL11O14625 94 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 TPD52L2O43399 206 aaKnown RBP11.78□□□□□ -0.52
VPS39-201ENST00000318006 TRIM13O60858 407 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 EPHX2P34913 555 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 AVPR1AP37288 418 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 MAPK10P53779 464 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 NME5P56597 212 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 QPCTQ16769 361 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 SAMD4BQ5PRF9 694 aaKnown RBP11.78□□□□□ -0.52
VPS39-201ENST00000318006 ARMC3Q5W041 872 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 AAGABQ6PD74 315 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 ABRAQ8N0Z2 381 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 TRPC4APQ8TEL6 797 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 GANCQ8TET4 914 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 PLEKHG4BQ96PX9 1271 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 FDXACB1Q9BRP7 624 aaPredicted RBP11.78□□□□□ -0.52
VPS39-201ENST00000318006 POLE3Q9NRF9 147 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 DMTF1Q9Y222 760 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 LTN1O94822 1766 aa11.78□□□□□ -0.52
VPS39-201ENST00000318006 FAM95CA0A1B0GW59 222 aa11.77□□□□□ -0.52
VPS39-201ENST00000318006 HMBSP08397 361 aa11.77□□□□□ -0.52
VPS39-201ENST00000318006 S100A1P23297 94 aa11.77□□□□□ -0.52
VPS39-201ENST00000318006 RGS4P49798 205 aa11.77□□□□□ -0.52
VPS39-201ENST00000318006 PRKAA2P54646 552 aa11.77□□□□□ -0.52
VPS39-201ENST00000318006 DRG2P55039 364 aaKnown RBP11.77□□□□□ -0.52
VPS39-201ENST00000318006 PURAQ00577 322 aaKnown RBP11.77□□□□□ -0.52
VPS39-201ENST00000318006 MFSD4BQ5TF39 518 aa11.77□□□□□ -0.52
VPS39-201ENST00000318006 CAMK1DQ8IU85 385 aa11.77□□□□□ -0.52
VPS39-201ENST00000318006 FBXW8Q8N3Y1 598 aa11.77□□□□□ -0.52
VPS39-201ENST00000318006 SETD9Q8NE22 299 aa11.77□□□□□ -0.52
VPS39-201ENST00000318006 UBE2OQ9C0C9 1292 aaKnown RBP11.77□□□□□ -0.52
VPS39-201ENST00000318006 FHDC1Q9C0D6 1143 aaPredicted RBP11.77□□□□□ -0.52
VPS39-201ENST00000318006 LATS2Q9NRM7 1088 aa11.77□□□□□ -0.52
VPS39-201ENST00000318006 ADAM30Q9UKF2 790 aa11.77□□□□□ -0.52
VPS39-201ENST00000318006 KLHL20Q9Y2M5 609 aa11.77□□□□□ -0.52
VPS39-201ENST00000318006 KLRC4O43908 158 aa11.77□□□□□ -0.52
VPS39-201ENST00000318006 KRT6BP04259 564 aa11.77□□□□□ -0.52
VPS39-201ENST00000318006 RBP1P09455 135 aa11.77□□□□□ -0.52
VPS39-201ENST00000318006 FGRP09769 529 aa11.77□□□□□ -0.52
VPS39-201ENST00000318006 HSMCR30P0CW71 290 aa11.77□□□□□ -0.52
VPS39-201ENST00000318006 MMP13P45452 471 aa11.77□□□□□ -0.52
VPS39-201ENST00000318006 OR1G1P47890 313 aa11.77□□□□□ -0.52
VPS39-201ENST00000318006 KRT6CP48668 564 aa11.77□□□□□ -0.52
VPS39-201ENST00000318006 GCNT1Q02742 428 aa11.77□□□□□ -0.52
VPS39-201ENST00000318006 PTPN11Q06124 597 aaPredicted RBP11.77□□□□□ -0.52
VPS39-201ENST00000318006 NCF4Q15080 339 aa11.77□□□□□ -0.52
VPS39-201ENST00000318006 CACHD1Q5VU97 1274 aa11.77□□□□□ -0.52
VPS39-201ENST00000318006 DNAJC18Q9H819 358 aa11.77□□□□□ -0.52
VPS39-201ENST00000318006 HBS1LQ9Y450 684 aaKnown RBP11.77□□□□□ -0.52
VPS39-201ENST00000318006 TMEM150BA6NC51 233 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 SNTNA6NMZ2 147 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 H3BRB1 525 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 MEIS2O14770 477 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 MRASO14807 208 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 INPP4BO15327 924 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 FAM20BO75063 409 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 ANXA9O76027 345 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 PDE9AO76083 593 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 TM4SF1P30408 202 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 PCSK7Q16549 785 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 NRF1Q16656 503 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 ZNF512Q96ME7 567 aaPredicted RBP11.77□□□□□ -0.53
VPS39-201ENST00000318006 SEPHS2Q99611 448 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 TUT1Q9H6E5 874 aaKnown RBP11.77□□□□□ -0.53
VPS39-201ENST00000318006 GPRC5DQ9NZD1 345 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 FARP1Q9Y4F1 1045 aaPredicted RBP11.77□□□□□ -0.53
VPS39-201ENST00000318006 M0QYT0 321 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 MAP3K13O43283 966 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 RHOBTB1O94844 696 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 MPOP05164 745 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 C1QBPQ07021 282 aaKnown RBP11.77□□□□□ -0.53
VPS39-201ENST00000318006 NDUFA5Q16718 116 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 LY6KQ17RY6 165 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 RNF220Q5VTB9 566 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 PKN3Q6P5Z2 889 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 C1orf186Q6ZWK4 172 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 KBTBD2Q8IY47 623 aa11.77□□□□□ -0.53
VPS39-201ENST00000318006 ETNPPLQ8TBG4 499 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms