RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 PGM3O95394 542 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 GCLCP48506 637 aaPredicted RBP17.75■□□□□ 0.43
SYNPO-201ENST00000307662 HARS2P49590 506 aaKnown RBP17.75■□□□□ 0.43
SYNPO-201ENST00000307662 PSMC6P62333 389 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 PTPN11Q06124 597 aaPredicted RBP17.75■□□□□ 0.43
SYNPO-201ENST00000307662 LENG1Q96BZ8 264 aaPredicted RBP17.75■□□□□ 0.43
SYNPO-201ENST00000307662 PIPSLA2A3N6 862 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 CCDC154A6NI56 674 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 PLA2G6O60733 806 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 MYL6P60660 151 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 PDK4Q16654 411 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 AMHR2Q16671 573 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 SYTL1Q8IYJ3 562 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 KATNAL2Q8IYT4 538 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 KAT2BQ92831 832 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 TBCBQ99426 244 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 SEPT5Q99719 369 aaPredicted RBP17.75■□□□□ 0.43
SYNPO-201ENST00000307662 GINS4Q9BRT9 223 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 UNKQ9C0B0 810 aaKnown RBP17.75■□□□□ 0.43
SYNPO-201ENST00000307662 GGA3Q9NZ52 723 aa17.75■□□□□ 0.43
SYNPO-201ENST00000307662 FAM237AA0A1B0GTK4 181 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 CENPXA8MT69 81 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 ICAM1P05362 532 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 MGAT1P26572 445 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 SLC25A3Q00325 362 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 C10orf120Q5SQS8 335 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 FAM228AQ86W67 206 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 TAF4O00268 1085 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 TCF7P36402 384 aaPredicted RBP17.74■□□□□ 0.43
SYNPO-201ENST00000307662 HK2P52789 917 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 GCNT1Q02742 428 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 CDH24Q86UP0 819 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 FAM136AQ96C01 138 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 CLEC4MQ9H2X3 399 aaPredicted RBP17.74■□□□□ 0.43
SYNPO-201ENST00000307662 SERHL2Q9H4I8 314 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 CYP3A43Q9HB55 503 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 SERHLQ9NQF3 203 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 CCDC167Q9P0B6 97 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 ALDH1A1P00352 501 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 CDH17Q12864 832 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 CDC16Q13042 620 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 POLD3Q15054 466 aaPredicted RBP17.74■□□□□ 0.43
SYNPO-201ENST00000307662 FBXW8Q8N3Y1 598 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 SMAD5Q99717 465 aaKnown RBP17.74■□□□□ 0.43
SYNPO-201ENST00000307662 PRKAG2Q9UGJ0 569 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 BTNL10A8MVZ5 291 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 ABHD2P08910 425 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 IRF1P10914 325 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 TYW3Q6IPR3 259 aaKnown RBP17.74■□□□□ 0.43
SYNPO-201ENST00000307662 DDX53Q86TM3 631 aaKnown RBP17.74■□□□□ 0.43
SYNPO-201ENST00000307662 ZDHHC13Q8IUH4 622 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 ST13P5Q8NFI4 369 aaPredicted RBP17.74■□□□□ 0.43
SYNPO-201ENST00000307662 RNFT2Q96EX2 444 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 DPY30Q9C005 99 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 RGS18Q9NS28 235 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 KLHL20Q9Y2M5 609 aa17.74■□□□□ 0.43
SYNPO-201ENST00000307662 ABLIM1O14639 778 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 FGFR3P22607 806 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 PRKCIP41743 596 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 TAF5Q15542 800 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 STYK1Q6J9G0 422 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP17.73■□□□□ 0.43
SYNPO-201ENST00000307662 PIWIL2Q8TC59 973 aaKnown RBP17.73■□□□□ 0.43
SYNPO-201ENST00000307662 UBASH3BQ8TF42 649 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 LIMD1Q9UGP4 676 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 VPS4BO75351 444 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 KRT6BP04259 564 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 SLC2A4P14672 509 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 ACO1P21399 889 aaKnown RBP17.73■□□□□ 0.43
SYNPO-201ENST00000307662 MAGEA10P43363 369 aaPredicted RBP17.73■□□□□ 0.43
SYNPO-201ENST00000307662 KRT6CP48668 564 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 RPL14P50914 215 aaKnown RBP17.73■□□□□ 0.43
SYNPO-201ENST00000307662 RPS7P62081 194 aaKnown RBP17.73■□□□□ 0.43
SYNPO-201ENST00000307662 BFSP2Q13515 415 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 RBM44Q6ZP01 1051 aaKnown RBP17.73■□□□□ 0.43
SYNPO-201ENST00000307662 ZNF606Q8WXB4 792 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 DGCR6LQ9BY27 220 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 TBC1D13Q9NVG8 400 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 C15orf38-AP3S2A0A0A6YYH1 394 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 ERI2A8K979 691 aaKnown RBP17.73■□□□□ 0.43
SYNPO-201ENST00000307662 SNPHO15079 494 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 ST8SIA6P61647 398 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 MAD2L1Q13257 205 aaPredicted RBP17.73■□□□□ 0.43
SYNPO-201ENST00000307662 FRG1Q14331 258 aaKnown RBP17.73■□□□□ 0.43
SYNPO-201ENST00000307662 NR1D2Q14995 579 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 NFIL3Q16649 462 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 DGKKQ5KSL6 1271 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 ARPINQ7Z6K5 226 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 KRT73Q86Y46 540 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 SLC44A2Q8IWA5 706 aaPredicted RBP17.73■□□□□ 0.43
SYNPO-201ENST00000307662 C8orf59Q8N0T1 100 aaPredicted RBP17.73■□□□□ 0.43
SYNPO-201ENST00000307662 HTR3CQ8WXA8 447 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 ART4Q93070 314 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 RIBC2Q9H4K1 309 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 NMRAL1Q9HBL8 299 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 CRTAMO95727 393 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 DPYSL3Q14195 570 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 ZNF268Q14587 947 aaPredicted RBP17.73■□□□□ 0.43
SYNPO-201ENST00000307662 KLHL17Q6TDP4 642 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 TMC7Q7Z402 723 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms