RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 ENPP3O14638 875 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 TYROBPO43914 113 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 F9P00740 461 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 SELPP16109 830 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 TPSB2P20231 275 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 HCAR3P49019 387 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 GATMP50440 423 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 SLC5A3P53794 718 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 TSPY1Q01534 308 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 AP1B1Q10567 949 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 NR1H3Q13133 447 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 TPSAB1Q15661 275 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 MAPRE1Q15691 268 aaKnown RBP6.75□□□□□ -1.33
USP47-201ENST00000305481 KBTBD12Q3ZCT8 623 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 SLC39A12Q504Y0 691 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 PPP1R21Q6ZMI0 780 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 CPLX4Q7Z7G2 160 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 C4orf33Q8N1A6 199 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 SLAIN1Q8ND83 568 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 DQX1Q8TE96 717 aaKnown RBP6.75□□□□□ -1.33
USP47-201ENST00000305481 SH3TC2Q8TF17 1288 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 CKAP2Q8WWK9 683 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 ZCWPW1Q9H0M4 648 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 WDCPQ9H6R7 721 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 RRN3Q9NYV6 651 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 HCSTQ9UBK5 93 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 OR12D3Q9UGF7 316 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 GRID1Q9ULK0 1009 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 NEU3Q9UQ49 428 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 PRG3Q9Y2Y8 225 aaPredicted RBP6.75□□□□□ -1.33
USP47-201ENST00000305481 TTLL3Q9Y4R7 772 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 PRPF4O43172 522 aaKnown RBP eCLIP6.75□□□□□ -1.33
USP47-201ENST00000305481 KRT15P19012 456 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 RPA3P35244 121 aaPredicted RBP6.75□□□□□ -1.33
USP47-201ENST00000305481 MAP2K2P36507 400 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 OR1G1P47890 313 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 GPR15P49685 360 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 APLP1P51693 650 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 HTRA3P83110 453 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 PLEKHG4Q58EX7 1191 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 ARHGEF18Q6ZSZ5 1173 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 BZW1Q7L1Q6 419 aaKnown RBP6.75□□□□□ -1.33
USP47-201ENST00000305481 SPATA2LQ8IUW3 424 aaPredicted RBP6.75□□□□□ -1.33
USP47-201ENST00000305481 FAM126BQ8IXS8 530 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 ZNF567Q8N184 647 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 CRIPAKQ8N1N5 446 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 DBF4BQ8NFT6 615 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 CFAP36Q96G28 342 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 GORASP1Q9BQQ3 440 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 FRMD8Q9BZ67 464 aaPredicted RBP6.75□□□□□ -1.33
USP47-201ENST00000305481 PPCSQ9HAB8 311 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 NMUR1Q9HB89 426 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 SMYD2Q9NRG4 433 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 OSER1Q9NX31 292 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 TET1Q8NFU7 2136 aa6.75□□□□□ -1.33
USP47-201ENST00000305481 FAM47DPA6NHR8 397 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 CXorf49A8MYA2 514 aaPredicted RBP6.74□□□□□ -1.33
USP47-201ENST00000305481 TCP11X1B4DZS4 312 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 LRIG2O94898 1065 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 FOXN2P32314 431 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 GRIK1P39086 918 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 TPI1P60174 286 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 YWHAGP61981 247 aaKnown RBP eCLIP6.74□□□□□ -1.33
USP47-201ENST00000305481 SF3A3Q12874 501 aaKnown RBP eCLIP6.74□□□□□ -1.33
USP47-201ENST00000305481 PDK1Q15118 436 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 KLHL38Q2WGJ6 581 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 SDHAF4Q5VUM1 108 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 BEND5Q7L4P6 421 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 COLGALT1Q8NBJ5 622 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 CCNYQ8ND76 341 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 B3GALT6Q96L58 329 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 CYTH2Q99418 400 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 TMEM161AQ9NX61 479 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 GGA2Q9UJY4 613 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 VWA8A3KMH1 1905 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 MYO18AQ92614 2054 aaKnown RBP6.74□□□□□ -1.33
USP47-201ENST00000305481 KCNK1O00180 336 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 FKTNO75072 461 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 FAM155BO75949 473 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 ASMTLO95671 621 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 VIMP08670 466 aaKnown RBP6.74□□□□□ -1.33
USP47-201ENST00000305481 KRT4P19013 534 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 SLC18A1P54219 525 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 CORO7P57737 925 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 IFRD2Q12894 506 aaPredicted RBP6.74□□□□□ -1.33
USP47-201ENST00000305481 IFT88Q13099 833 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 DDR2Q16832 855 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 UNC5AQ6ZN44 842 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 SH2D5Q6ZV89 423 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 TTC9BQ8N6N2 239 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 PDCD7Q8N8D1 485 aaKnown RBP6.74□□□□□ -1.33
USP47-201ENST00000305481 ZSCAN18Q8TBC5 510 aaPredicted RBP6.74□□□□□ -1.33
USP47-201ENST00000305481 URGCPQ8TCY9 931 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 SLC44A1Q8WWI5 657 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 DPF3Q92784 378 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 CASP10Q92851 521 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 CASD1Q96PB1 797 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 FTHL17Q9BXU8 183 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 GPR62Q9BZJ7 368 aa6.74□□□□□ -1.33
USP47-201ENST00000305481 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms