RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 LINC00471Q8N535 108 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 LSM14AQ8ND56 463 aaKnown RBP5.37□□□□□ -1.55
SCN1A-201ENST00000303395 GMCL1P1Q8NEA9 526 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 TMEM174Q8WUU8 243 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 GJA10Q969M2 543 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 ACSBG1Q96GR2 724 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 LBHD1Q9BQE6 289 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-201ENST00000303395 TMEM121Q9BTD3 319 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 SHCBP1LQ9BZQ2 653 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 HHATLQ9HCP6 504 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 ZCCHC17Q9NP64 241 aaKnown RBP5.37□□□□□ -1.55
SCN1A-201ENST00000303395 ATRXP46100 2492 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 A0A087X1B8 175 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 PRODHO43272 600 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 REM1O75628 298 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 UBOX5O94941 541 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 SERPIND1P05546 499 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 PGAM1P18669 254 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 ALDH9A1P49189 494 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 PNLIPRP1P54315 467 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 ERVK-24P63145 666 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 EIF5AP63241 154 aaKnown RBP5.37□□□□□ -1.55
SCN1A-201ENST00000303395 ADCY1Q08828 1119 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 MPP3Q13368 585 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 NTRK3Q16288 839 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 FAM98BQ52LJ0 330 aaKnown RBP5.37□□□□□ -1.55
SCN1A-201ENST00000303395 FAM47EQ6ZV65 393 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 MIER2Q8N344 545 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 CAPSLQ8WWF8 208 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 CDC42EP4Q9H3Q1 356 aaKnown RBP5.37□□□□□ -1.55
SCN1A-201ENST00000303395 NOS1APO75052 506 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-201ENST00000303395 CDH3P22223 829 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 RFX5P48382 616 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-201ENST00000303395 CLK1P49759 484 aaKnown RBP5.36□□□□□ -1.55
SCN1A-201ENST00000303395 IST1P53990 364 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 LPIN1Q14693 890 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 ACCSLQ4AC99 568 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 ALFQ53S48 1182 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 CACHD1Q5VU97 1274 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 DYMQ7RTS9 669 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 NT5DC3Q86UY8 548 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 P3H2Q8IVL5 708 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 SULF1Q8IWU6 871 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 ACTRT2Q8TDY3 377 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 EXT2Q93063 718 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 GMCL1Q96IK5 515 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 DCP1AQ9NPI6 582 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-201ENST00000303395 COMMD8Q9NX08 183 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 SEPT9Q9UHD8 586 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-201ENST00000303395 SLC25A13Q9UJS0 675 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 GTF2A1LQ9UNN4 478 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 LZTS1Q9Y250 596 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 ZBTB12Q9Y330 459 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-201ENST00000303395 AP3D1O14617 1153 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 TEX33O43247 280 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 CD4P01730 458 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 IGKV5-2P06315 115 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 MLH1P40692 756 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 ACTR3P61158 418 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 ARF5P84085 180 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 TTLL9Q3SXZ7 439 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 ANKRD40Q6AI12 368 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 IYDQ6PHW0 289 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 TXNDC11Q6PKC3 985 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 PROSER1Q86XN7 944 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 STK40Q8N2I9 435 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 GALNT6Q8NCL4 622 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 RORBQ92753 470 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 AP1S3Q96PC3 154 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 GPN3Q9UHW5 284 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-201ENST00000303395 CHD4Q14839 1912 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 AKAP12Q02952 1782 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 CYP3A7-CYP3A51PA0A087WV96 503 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 QSOX1O00391 747 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 CFL1P23528 166 aaKnown RBP5.36□□□□□ -1.55
SCN1A-201ENST00000303395 CYP3A7P24462 503 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 IFNGR2P38484 337 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 MPP1Q00013 466 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 CREMQ03060 361 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 PUDPQ08623 228 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 SF3A3Q12874 501 aaKnown RBP eCLIP5.36□□□□□ -1.552e-17■■■■■ 37.8
SCN1A-201ENST00000303395 DPY19L1Q2PZI1 675 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 CERKLQ49MI3 558 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-201ENST00000303395 SYTL3Q4VX76 610 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 RFTN2Q52LD8 501 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-201ENST00000303395 PDPK2PQ6A1A2 396 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 PMF1Q6P1K2 205 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 C16orf86Q6ZW13 317 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 ADAT2Q7Z6V5 191 aaKnown RBP5.36□□□□□ -1.55
SCN1A-201ENST00000303395 TMEM139Q8IV31 216 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 GSPT2Q8IYD1 628 aaKnown RBP5.36□□□□□ -1.55
SCN1A-201ENST00000303395 TSPAN14Q8NG11 270 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 COQ7Q99807 217 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 NUSAP1Q9BXS6 441 aaKnown RBP5.36□□□□□ -1.55
SCN1A-201ENST00000303395 GPCPD1Q9NPB8 672 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 PRMT7Q9NVM4 692 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-201ENST00000303395 IL20Q9NYY1 176 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 MGAT4AQ9UM21 535 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 LDLRP01130 860 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 TPSB2P20231 275 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms