RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 RNF139Q8WU17 664 aa15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 FOXD4L4Q8WXT5 416 aaPredicted RBP15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 SORCS1Q8WY21 1168 aa15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 TMEM245Q9H330 911 aa15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 C6orf106Q9H6K1 298 aaPredicted RBP15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 SGK2Q9HBY8 427 aa15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 TM9SF3Q9HD45 589 aa15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 CISHQ9NSE2 258 aa15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 SUN2Q9UH99 717 aa15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 RCOR1Q9UKL0 485 aa15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 CLEC4EQ9ULY5 219 aa15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 RAXQ9Y2V3 346 aa15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 EIF4E1BA6NMX2 242 aaKnown RBP15.42■□□□□ 0.06
CCDC88B-201ENST00000301897 RHOBTB3O94955 611 aa15.42■□□□□ 0.06
CCDC88B-201ENST00000301897 DNTTP04053 509 aa15.42■□□□□ 0.06
CCDC88B-201ENST00000301897 DLDP09622 509 aaKnown RBP15.42■□□□□ 0.06
CCDC88B-201ENST00000301897 CD27P26842 260 aa15.42■□□□□ 0.06
CCDC88B-201ENST00000301897 TKTL1P51854 596 aa15.42■□□□□ 0.06
CCDC88B-201ENST00000301897 MCCD1P59942 119 aaPredicted RBP15.42■□□□□ 0.06
CCDC88B-201ENST00000301897 ADAM9Q13443 819 aa15.42■□□□□ 0.06
CCDC88B-201ENST00000301897 KIF19Q2TAC6 998 aa15.42■□□□□ 0.06
CCDC88B-201ENST00000301897 FOXD4L6Q3SYB3 417 aaPredicted RBP15.42■□□□□ 0.06
CCDC88B-201ENST00000301897 ADGRF1Q5T601 910 aa15.42■□□□□ 0.06
CCDC88B-201ENST00000301897 FOXD4L3Q6VB84 417 aaPredicted RBP15.42■□□□□ 0.06
CCDC88B-201ENST00000301897 ADAT2Q7Z6V5 191 aaKnown RBP15.42■□□□□ 0.06
CCDC88B-201ENST00000301897 FMNL3Q8IVF7 1028 aa15.42■□□□□ 0.06
CCDC88B-201ENST00000301897 SCUBE3Q8IX30 993 aa15.42■□□□□ 0.06
CCDC88B-201ENST00000301897 AHI1Q8N157 1196 aa15.42■□□□□ 0.06
CCDC88B-201ENST00000301897 SLC4A11Q8NBS3 891 aa15.42■□□□□ 0.06
CCDC88B-201ENST00000301897 FBXL13Q8NEE6 735 aa15.42■□□□□ 0.06
CCDC88B-201ENST00000301897 HNRNPLLQ8WVV9 542 aaKnown RBP15.42■□□□□ 0.06
CCDC88B-201ENST00000301897 SKA1Q96BD8 255 aa15.42■□□□□ 0.06
CCDC88B-201ENST00000301897 TMA16Q96EY4 203 aaKnown RBP15.42■□□□□ 0.06
CCDC88B-201ENST00000301897 IPO9Q96P70 1041 aaKnown RBP15.42■□□□□ 0.06
CCDC88B-201ENST00000301897 ARID3AQ99856 593 aa15.42■□□□□ 0.06
CCDC88B-201ENST00000301897 HESX1Q9UBX0 185 aa15.42■□□□□ 0.06
CCDC88B-201ENST00000301897 STOML2Q9UJZ1 356 aa15.42■□□□□ 0.06
CCDC88B-201ENST00000301897 SCML1Q9UN30 329 aa15.42■□□□□ 0.06
CCDC88B-201ENST00000301897 SNX11Q9Y5W9 270 aa15.42■□□□□ 0.06
CCDC88B-201ENST00000301897 FLNBO75369 2602 aaKnown RBP15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 XPO1O14980 1071 aaKnown RBP15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 PAPSS1O43252 624 aaPredicted RBP15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 TSPAN3O60637 253 aa15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 HSP90AA1P07900 732 aaKnown RBP15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 CDK4P11802 303 aa15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 HLA-EP13747 358 aa15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 CMA1P23946 247 aa15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 HLA-FP30511 346 aa15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 ACSL1P33121 698 aa15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 MXI1P50539 228 aa15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 RAD23BP54727 409 aa15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 YWHAEP62258 255 aaKnown RBP15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 SMAD1Q15797 465 aaKnown RBP15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 PTPRNQ16849 979 aa15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 MPP7Q5T2T1 576 aa15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 ZNF776Q68DI1 518 aaPredicted RBP15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 CHST9Q7L1S5 443 aa15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 KIAA0907Q7Z7F0 614 aaPredicted RBP15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 GUF1Q8N442 669 aaKnown RBP15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 SNX21Q969T3 373 aa15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 MMRN2Q9H8L6 949 aa15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 LRRC4Q9HBW1 653 aa15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 ABCB8Q9NUT2 735 aa15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 RAB20Q9NX57 234 aa15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 GGA2Q9UJY4 613 aa15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 NCKAP1Q9Y2A7 1128 aa15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 BTBD3Q9Y2F9 522 aa15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 TMEM131Q92545 1883 aa15.41■□□□□ 0.06
CCDC88B-201ENST00000301897 MUC22E2RYF6 1773 aaPredicted RBP15.4■□□□□ 0.06
CCDC88B-201ENST00000301897 TRABD2BA6NFA1 517 aa15.4■□□□□ 0.06
CCDC88B-201ENST00000301897 GOLGA8CPA6NN73 597 aa15.4■□□□□ 0.06
CCDC88B-201ENST00000301897 IRAK2O43187 625 aa15.4■□□□□ 0.06
CCDC88B-201ENST00000301897 PABPC1P11940 636 aaKnown RBP15.4■□□□□ 0.06
CCDC88B-201ENST00000301897 PFKFB1P16118 471 aa15.4■□□□□ 0.06
CCDC88B-201ENST00000301897 POLR2EP19388 210 aaKnown RBP15.4■□□□□ 0.06
CCDC88B-201ENST00000301897 RPS14P62263 151 aaKnown RBP15.4■□□□□ 0.06
CCDC88B-201ENST00000301897 CYP4F3Q08477 520 aa15.4■□□□□ 0.06
CCDC88B-201ENST00000301897 BST2Q10589 180 aaKnown RBP15.4■□□□□ 0.06
CCDC88B-201ENST00000301897 USP30Q70CQ3 517 aa15.4■□□□□ 0.06
CCDC88B-201ENST00000301897 BIRC7Q96CA5 298 aa15.4■□□□□ 0.06
CCDC88B-201ENST00000301897 LRIG1Q96JA1 1093 aa15.4■□□□□ 0.06
CCDC88B-201ENST00000301897 ULBP1Q9BZM6 244 aa15.4■□□□□ 0.06
CCDC88B-201ENST00000301897 ABCC13Q9NSE7 274 aa15.4■□□□□ 0.06
CCDC88B-201ENST00000301897 FTSJ1Q9UET6 329 aa15.4■□□□□ 0.06
CCDC88B-201ENST00000301897 SETXQ7Z333 2677 aaKnown RBP15.39■□□□□ 0.05
CCDC88B-201ENST00000301897 A0A087WV48 116 aa15.39■□□□□ 0.05
CCDC88B-201ENST00000301897 RNASEH1O60930 286 aaKnown RBP15.39■□□□□ 0.05
CCDC88B-201ENST00000301897 FSBPO95073 299 aa15.39■□□□□ 0.05
CCDC88B-201ENST00000301897 CTSKP43235 329 aa15.39■□□□□ 0.05
CCDC88B-201ENST00000301897 C21orf59P57076 290 aa15.39■□□□□ 0.05
CCDC88B-201ENST00000301897 ST8SIA6P61647 398 aa15.39■□□□□ 0.05
CCDC88B-201ENST00000301897 RACK1P63244 317 aaKnown RBP15.39■□□□□ 0.05
CCDC88B-201ENST00000301897 DNM1Q05193 864 aaKnown RBP15.39■□□□□ 0.05
CCDC88B-201ENST00000301897 EDRF1Q3B7T1 1238 aa15.39■□□□□ 0.05
CCDC88B-201ENST00000301897 SGO2Q562F6 1265 aa15.39■□□□□ 0.05
CCDC88B-201ENST00000301897 BSPRYQ5W0U4 402 aa15.39■□□□□ 0.05
CCDC88B-201ENST00000301897 MBLAC2Q68D91 279 aa15.39■□□□□ 0.05
CCDC88B-201ENST00000301897 ADIPOR2Q86V24 386 aa15.39■□□□□ 0.05
CCDC88B-201ENST00000301897 TMPRSS12Q86WS5 348 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms