RNA–Protein interactions for RNA: ENST00000296051.6

HPS3-201, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS3, Length 4,665 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-201ENST00000296051 ZMYND8Q9ULU4 1186 aaPredicted RBP13.78□□□□□ -0.2
HPS3-201ENST00000296051 NFS1Q9Y697 457 aa13.78□□□□□ -0.2
HPS3-201ENST00000296051 PRR5-ARHGAP8B1AHC4 643 aa13.78□□□□□ -0.2
HPS3-201ENST00000296051 CYP1A2P05177 515 aa13.78□□□□□ -0.2
HPS3-201ENST00000296051 PAEPP09466 180 aa13.78□□□□□ -0.2
HPS3-201ENST00000296051 CPA3P15088 417 aa13.78□□□□□ -0.2
HPS3-201ENST00000296051 MLH1P40692 756 aa13.78□□□□□ -0.2
HPS3-201ENST00000296051 HADHAP40939 763 aa13.78□□□□□ -0.2
HPS3-201ENST00000296051 SLC1A6P48664 564 aa13.78□□□□□ -0.2
HPS3-201ENST00000296051 WDR4P57081 412 aaKnown RBP13.78□□□□□ -0.2
HPS3-201ENST00000296051 ARHGAP8P85298 464 aa13.78□□□□□ -0.2
HPS3-201ENST00000296051 ZBTB17Q13105 803 aa13.78□□□□□ -0.2
HPS3-201ENST00000296051 MFSD5Q6N075 450 aa13.78□□□□□ -0.2
HPS3-201ENST00000296051 CES5AQ6NT32 575 aa13.78□□□□□ -0.2
HPS3-201ENST00000296051 BNC2Q6ZN30 1099 aaPredicted RBP13.78□□□□□ -0.2
HPS3-201ENST00000296051 HSD17B14Q9BPX1 270 aa13.78□□□□□ -0.2
HPS3-201ENST00000296051 CATSPERBQ9H7T0 1116 aa13.78□□□□□ -0.2
HPS3-201ENST00000296051 CHST12Q9NRB3 414 aa13.78□□□□□ -0.2
HPS3-201ENST00000296051 ZNF229Q9UJW7 825 aa13.78□□□□□ -0.2
HPS3-201ENST00000296051 SLC12A4Q9UP95 1085 aa13.78□□□□□ -0.2
HPS3-201ENST00000296051 FAM155BO75949 473 aa13.78□□□□□ -0.2
HPS3-201ENST00000296051 CTNNB1P35222 781 aa13.78□□□□□ -0.2
HPS3-201ENST00000296051 RAB27AP51159 221 aa13.78□□□□□ -0.2
HPS3-201ENST00000296051 IMPG1Q17R60 797 aa13.78□□□□□ -0.2
HPS3-201ENST00000296051 ATP6V0D2Q8N8Y2 350 aa13.78□□□□□ -0.2
HPS3-201ENST00000296051 IPMKQ8NFU5 416 aa13.78□□□□□ -0.2
HPS3-201ENST00000296051 ACSS2Q9NR19 701 aa13.78□□□□□ -0.2
HPS3-201ENST00000296051 CHCHD3Q9NX63 227 aaKnown RBP13.78□□□□□ -0.2
HPS3-201ENST00000296051 CDYLQ9Y232 598 aa13.78□□□□□ -0.2
HPS3-201ENST00000296051 HES2Q9Y543 173 aa13.78□□□□□ -0.2
HPS3-201ENST00000296051 AK5Q9Y6K8 562 aa13.78□□□□□ -0.2
HPS3-201ENST00000296051 EGFRP00533 1210 aa13.77□□□□□ -0.2
HPS3-201ENST00000296051 TPBGLP0DKB5 382 aa13.77□□□□□ -0.2
HPS3-201ENST00000296051 EIF4BP23588 611 aaKnown RBP13.77□□□□□ -0.2
HPS3-201ENST00000296051 NFIL3Q16649 462 aa13.77□□□□□ -0.2
HPS3-201ENST00000296051 FAM172AQ8WUF8 416 aa13.77□□□□□ -0.2
HPS3-201ENST00000296051 PTPRN2Q92932 1015 aa13.77□□□□□ -0.2
HPS3-201ENST00000296051 ANGPT2O15123 496 aa13.77□□□□□ -0.21
HPS3-201ENST00000296051 MGEA5O60502 916 aa13.77□□□□□ -0.21
HPS3-201ENST00000296051 SYNCRIPO60506 623 aaKnown RBP13.77□□□□□ -0.21
HPS3-201ENST00000296051 GLRA3O75311 464 aa13.77□□□□□ -0.21
HPS3-201ENST00000296051 LYPLA1O75608 230 aaPredicted RBP13.77□□□□□ -0.21
HPS3-201ENST00000296051 TGM2P21980 687 aa13.77□□□□□ -0.21
HPS3-201ENST00000296051 RBL1P28749 1068 aa13.77□□□□□ -0.21
HPS3-201ENST00000296051 DAB2P98082 770 aa13.77□□□□□ -0.21
HPS3-201ENST00000296051 GON4LQ3T8J9 2241 aa13.77□□□□□ -0.21
HPS3-201ENST00000296051 CARNMT1Q8N4J0 409 aa13.77□□□□□ -0.21
HPS3-201ENST00000296051 NDNQ99608 321 aa13.77□□□□□ -0.21
HPS3-201ENST00000296051 PIF1Q9H611 641 aa13.77□□□□□ -0.21
HPS3-201ENST00000296051 SAC3D1A6NKF1 404 aa13.77□□□□□ -0.21
HPS3-201ENST00000296051 HNRNPRO43390 633 aaKnown RBP13.77□□□□□ -0.21
HPS3-201ENST00000296051 LZTS3O60299 673 aaPredicted RBP13.77□□□□□ -0.21
HPS3-201ENST00000296051 KPNA1P52294 538 aaPredicted RBP13.77□□□□□ -0.21
HPS3-201ENST00000296051 GCNT1Q02742 428 aa13.77□□□□□ -0.21
HPS3-201ENST00000296051 C1QBPQ07021 282 aaKnown RBP13.77□□□□□ -0.21
HPS3-201ENST00000296051 MMRN1Q13201 1228 aa13.77□□□□□ -0.21
HPS3-201ENST00000296051 PTK2BQ14289 1009 aa13.77□□□□□ -0.21
HPS3-201ENST00000296051 PARP6Q2NL67 630 aa13.77□□□□□ -0.21
HPS3-201ENST00000296051 SYTL3Q4VX76 610 aa13.77□□□□□ -0.21
HPS3-201ENST00000296051 C6orf10Q5SRN2 563 aa13.77□□□□□ -0.21
HPS3-201ENST00000296051 MTHFD1LQ6UB35 978 aa13.77□□□□□ -0.21
HPS3-201ENST00000296051 SLFN11Q7Z7L1 901 aa13.77□□□□□ -0.21
HPS3-201ENST00000296051 SNX32Q86XE0 403 aa13.77□□□□□ -0.21
HPS3-201ENST00000296051 EMILIN2Q9BXX0 1053 aa13.77□□□□□ -0.21
HPS3-201ENST00000296051 MRPL9Q9BYD2 267 aaKnown RBP13.77□□□□□ -0.21
HPS3-201ENST00000296051 PTPRHQ9HD43 1115 aa13.77□□□□□ -0.21
HPS3-201ENST00000296051 CLCA2Q9UQC9 943 aa13.77□□□□□ -0.21
HPS3-201ENST00000296051 F5H5T6 163 aa13.76□□□□□ -0.21
HPS3-201ENST00000296051 MIPP30301 263 aa13.76□□□□□ -0.21
HPS3-201ENST00000296051 DPYSL3Q14195 570 aa13.76□□□□□ -0.21
HPS3-201ENST00000296051 C15orf52Q6ZUT6 534 aaKnown RBP13.76□□□□□ -0.21
HPS3-201ENST00000296051 CCDC60Q8IWA6 550 aaPredicted RBP13.76□□□□□ -0.21
HPS3-201ENST00000296051 DACT3Q96B18 629 aaPredicted RBP13.76□□□□□ -0.21
HPS3-201ENST00000296051 ELMO2Q96JJ3 720 aa13.76□□□□□ -0.21
HPS3-201ENST00000296051 MARK4Q96L34 752 aa13.76□□□□□ -0.21
HPS3-201ENST00000296051 SIX2Q9NPC8 291 aa13.76□□□□□ -0.21
HPS3-201ENST00000296051 ARHGEF3Q9NR81 526 aa13.76□□□□□ -0.21
HPS3-201ENST00000296051 A0A0B4J269 797 aa13.76□□□□□ -0.21
HPS3-201ENST00000296051 PMPCBO75439 489 aa13.76□□□□□ -0.21
HPS3-201ENST00000296051 PSMD10O75832 226 aa13.76□□□□□ -0.21
HPS3-201ENST00000296051 CSE1LP55060 971 aaKnown RBP13.76□□□□□ -0.21
HPS3-201ENST00000296051 TEDDM1Q5T9Z0 273 aa13.76□□□□□ -0.21
HPS3-201ENST00000296051 APLFQ8IW19 511 aaPredicted RBP13.76□□□□□ -0.21
HPS3-201ENST00000296051 KATNAL2Q8IYT4 538 aa13.76□□□□□ -0.21
HPS3-201ENST00000296051 CLEC4FQ8N1N0 589 aa13.76□□□□□ -0.21
HPS3-201ENST00000296051 SYT15Q9BQS2 421 aa13.76□□□□□ -0.21
HPS3-201ENST00000296051 PAIP1Q9H074 479 aaKnown RBP13.76□□□□□ -0.21
HPS3-201ENST00000296051 VPS28Q9UK41 221 aa13.76□□□□□ -0.21
HPS3-201ENST00000296051 TSC22D4Q9Y3Q8 395 aa13.76□□□□□ -0.21
HPS3-201ENST00000296051 SCAMP3O14828 347 aaKnown RBP13.76□□□□□ -0.21
HPS3-201ENST00000296051 GFAPP14136 432 aa13.76□□□□□ -0.21
HPS3-201ENST00000296051 GARTP22102 1010 aa13.76□□□□□ -0.21
HPS3-201ENST00000296051 PTGER2P43116 358 aa13.76□□□□□ -0.21
HPS3-201ENST00000296051 LHX1P48742 406 aa13.76□□□□□ -0.21
HPS3-201ENST00000296051 SCNN1GP51170 649 aa13.76□□□□□ -0.21
HPS3-201ENST00000296051 SNRPFP62306 86 aaKnown RBP13.76□□□□□ -0.21
HPS3-201ENST00000296051 ATP1A4Q13733 1029 aa13.76□□□□□ -0.21
HPS3-201ENST00000296051 FAM110CQ1W6H9 321 aa13.76□□□□□ -0.21
HPS3-201ENST00000296051 SPRYD7Q5W111 196 aa13.76□□□□□ -0.21
HPS3-201ENST00000296051 LPCAT2Q7L5N7 544 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms