RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 NT5C1AQ9BXI3 368 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 GPR63Q9BZJ6 419 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 KCNMB3Q9NPA1 279 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 ATP6V1HQ9UI12 483 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 FAM86B1E9PN63 330 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 FAM86B2P0C5J1 330 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 LBPP18428 481 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 GCNT1Q02742 428 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 FIG4Q92562 907 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 SGF29Q96ES7 293 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 DKK3Q9UBP4 350 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 ASMTLO95671 621 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 RPL21P46778 160 aaKnown RBP10.1□□□□□ -0.79
COL6A3-201ENST00000295550 PRKCQQ04759 706 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 ARHGEF7Q14155 803 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 ARHGEF6Q15052 776 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 PDK2Q15119 407 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 MZT2BQ6NZ67 158 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 CCDC126Q96EE4 140 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 GANQ9H2C0 597 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 AGO4Q9HCK5 861 aaKnown RBP10.1□□□□□ -0.79
COL6A3-201ENST00000295550 METTL5Q9NRN9 209 aaKnown RBP10.1□□□□□ -0.79
COL6A3-201ENST00000295550 PCDHA3Q9Y5H8 950 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 A0A1W2PRG6 482 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 EFCAB10A6NFE3 127 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 EID3Q8N140 333 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 TMEM39BQ9GZU3 492 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 PCYOX1Q9UHG3 505 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 CYP3A7-CYP3A51PA0A087WV96 503 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 ATG7O95352 703 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 CLTBP09497 229 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 CYP3A7P24462 503 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 FDFT1P37268 417 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 NAMPTP43490 491 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 ACADSBP45954 432 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 VEPH1Q14D04 833 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 ZFP1Q6P2D0 407 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 SMIM5Q71RC9 77 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 FBXO36Q8NEA4 188 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 PPP1R10Q96QC0 940 aaKnown RBP10.09□□□□□ -0.79
COL6A3-201ENST00000295550 FAM49BQ9NUQ9 324 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 R3HDM2Q9Y2K5 976 aaKnown RBP10.09□□□□□ -0.79
COL6A3-201ENST00000295550 MAGEB2O15479 319 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 TEX28O15482 410 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 RXRBP28702 533 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 ITGADQ13349 1161 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 CASP12Q6UXS9 341 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 CHST13Q8NET6 341 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 CATSPERBQ9H7T0 1116 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 PHRF1Q9P1Y6 1649 aaKnown RBP10.09□□□□□ -0.79
COL6A3-201ENST00000295550 FAM220BPB1ANY3 271 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 MTSS1O43312 755 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 GUCA1AP43080 201 aaPredicted RBP10.09□□□□□ -0.79
COL6A3-201ENST00000295550 WASHC2DQ5SRD0 308 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 UGT3A1Q6NUS8 523 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 SPATA2LQ8IUW3 424 aaPredicted RBP10.09□□□□□ -0.79
COL6A3-201ENST00000295550 SETD9Q8NE22 299 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 SYNDIG1Q9H7V2 258 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 PCDH9Q9HC56 1237 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 MYL12BO14950 172 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 STAT5AP42229 794 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 RGS7P49802 495 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 TBCELQ5QJ74 424 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 DENND1BQ6P3S1 775 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 NIPA1Q7RTP0 329 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 VCPIP1Q96JH7 1222 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 CHID1Q9BWS9 393 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 RGS18Q9NS28 235 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 SDR42E2A6NKP2 422 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 IER5Q5VY09 327 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 TXNRD3Q86VQ6 643 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 MCOLN2Q8IZK6 566 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 RAD18Q9NS91 495 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 FAM92AA1XBS5 289 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 CCNIQ14094 377 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 HIST2H2ACQ16777 129 aaPredicted RBP10.09□□□□□ -0.79
COL6A3-201ENST00000295550 HIST2H2AA3Q6FI13 130 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 SLC44A2Q8IWA5 706 aaPredicted RBP10.09□□□□□ -0.79
COL6A3-201ENST00000295550 CCDC33Q8N5R6 958 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 CAMKK2Q96RR4 588 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 RPS6KL1Q9Y6S9 549 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 ASTN1O14525 1302 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 A0A087WXM4 84 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 VWA5AO00534 786 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 ETFBP38117 255 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 SRP54P61011 504 aaKnown RBP10.09□□□□□ -0.79
COL6A3-201ENST00000295550 FCHO2Q0JRZ9 810 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 ARL10Q8N8L6 244 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 TRPC4APQ8TEL6 797 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 RPS6KB2Q9UBS0 482 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 SNX8Q9Y5X2 465 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 DDX3XO00571 662 aaKnown RBP eCLIP10.09□□□□□ -0.79
COL6A3-201ENST00000295550 HS6ST1O60243 411 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 S100A6P06703 90 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 ATP4AP20648 1035 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 BMT2Q1RMZ1 405 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 C15orf52Q6ZUT6 534 aaKnown RBP10.09□□□□□ -0.79
COL6A3-201ENST00000295550 LRP10Q7Z4F1 713 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 OSCP1Q8WVF1 389 aa10.09□□□□□ -0.79
COL6A3-201ENST00000295550 SEMA4AQ9H3S1 761 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms