RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 FAM200BP0CF97 657 aa20.69■□□□□ 0.9
VPS53-201ENST00000291074 PSMB4P28070 264 aa20.69■□□□□ 0.9
VPS53-201ENST00000291074 CLCNKBP51801 687 aa20.69■□□□□ 0.9
VPS53-201ENST00000291074 OLIG2Q13516 323 aa20.69■□□□□ 0.9
VPS53-201ENST00000291074 STAMBPL1Q96FJ0 436 aa20.69■□□□□ 0.9
VPS53-201ENST00000291074 KATNAL1Q9BW62 490 aa20.69■□□□□ 0.9
VPS53-201ENST00000291074 RCOR3Q9P2K3 495 aaPredicted RBP20.69■□□□□ 0.9
VPS53-201ENST00000291074 EPB41L3Q9Y2J2 1087 aaPredicted RBP20.69■□□□□ 0.9
VPS53-201ENST00000291074 CCDC195A0A1B0GUA6 201 aa20.68■□□□□ 0.9
VPS53-201ENST00000291074 HACD1B0YJ81 288 aa20.68■□□□□ 0.9
VPS53-201ENST00000291074 C6orf222P0C671 652 aaPredicted RBP20.68■□□□□ 0.9
VPS53-201ENST00000291074 HOXC8P31273 242 aa20.68■□□□□ 0.9
VPS53-201ENST00000291074 CST9Q5W186 159 aa20.68■□□□□ 0.9
VPS53-201ENST00000291074 KCTD13Q8WZ19 329 aa20.68■□□□□ 0.9
VPS53-201ENST00000291074 PRR11Q96HE9 360 aaPredicted RBP20.68■□□□□ 0.9
VPS53-201ENST00000291074 SLC2A13Q96QE2 648 aa20.68■□□□□ 0.9
VPS53-201ENST00000291074 TSPAN18Q96SJ8 248 aa20.68■□□□□ 0.9
VPS53-201ENST00000291074 PAAF1Q9BRP4 392 aa20.68■□□□□ 0.9
VPS53-201ENST00000291074 TRIM55Q9BYV6 548 aa20.68■□□□□ 0.9
VPS53-201ENST00000291074 RHOBTB2Q9BYZ6 727 aa20.68■□□□□ 0.9
VPS53-201ENST00000291074 LRMDAQ9H2I8 198 aa20.68■□□□□ 0.9
VPS53-201ENST00000291074 YY1AP1Q9H869 796 aa20.68■□□□□ 0.9
VPS53-201ENST00000291074 STAP1Q9ULZ2 295 aa20.68■□□□□ 0.9
VPS53-201ENST00000291074 PLLPQ9Y342 182 aa20.68■□□□□ 0.9
VPS53-201ENST00000291074 NUP205Q92621 2012 aa20.68■□□□□ 0.9
VPS53-201ENST00000291074 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.68■□□□□ 0.9
VPS53-201ENST00000291074 TOMM70O94826 608 aa20.68■□□□□ 0.9
VPS53-201ENST00000291074 MGAT1P26572 445 aa20.68■□□□□ 0.9
VPS53-201ENST00000291074 HUNKP57058 714 aa20.68■□□□□ 0.9
VPS53-201ENST00000291074 CES4AQ5XG92 561 aa20.68■□□□□ 0.9
VPS53-201ENST00000291074 MAGEC3Q8TD91 643 aa20.68■□□□□ 0.9
VPS53-201ENST00000291074 SLC7A6OSQ96CW6 309 aaPredicted RBP20.68■□□□□ 0.9
VPS53-201ENST00000291074 PCED1BQ96HM7 432 aa20.68■□□□□ 0.9
VPS53-201ENST00000291074 SMOQ99835 787 aa20.68■□□□□ 0.9
VPS53-201ENST00000291074 SYT15Q9BQS2 421 aa20.68■□□□□ 0.9
VPS53-201ENST00000291074 KCNK13Q9HB14 408 aa20.68■□□□□ 0.9
VPS53-201ENST00000291074 ST3GAL5Q9UNP4 418 aa20.68■□□□□ 0.9
VPS53-201ENST00000291074 SHROOM3Q8TF72 1996 aa20.67■□□□□ 0.9
VPS53-201ENST00000291074 BRCA2P51587 3418 aa20.67■□□□□ 0.9
VPS53-201ENST00000291074 KCNK1O00180 336 aa20.67■□□□□ 0.9
VPS53-201ENST00000291074 EEF2KO00418 725 aaKnown RBP20.67■□□□□ 0.9
VPS53-201ENST00000291074 AP1G2O75843 785 aa20.67■□□□□ 0.9
VPS53-201ENST00000291074 KRT38O76015 456 aa20.67■□□□□ 0.9
VPS53-201ENST00000291074 GSTA2P09210 222 aa20.67■□□□□ 0.9
VPS53-201ENST00000291074 CCNFP41002 786 aa20.67■□□□□ 0.9
VPS53-201ENST00000291074 WASHC5Q12768 1159 aa20.67■□□□□ 0.9
VPS53-201ENST00000291074 CLNKQ7Z7G1 428 aa20.67■□□□□ 0.9
VPS53-201ENST00000291074 GPATCH11Q8N954 259 aa20.67■□□□□ 0.9
VPS53-201ENST00000291074 ZMIZ2Q8NF64 920 aa20.67■□□□□ 0.9
VPS53-201ENST00000291074 ZNF395Q9H8N7 513 aaPredicted RBP20.67■□□□□ 0.9
VPS53-201ENST00000291074 FAM105AQ9NUU6 356 aa20.67■□□□□ 0.9
VPS53-201ENST00000291074 GEMIN8Q9NWZ8 242 aaKnown RBP20.67■□□□□ 0.9
VPS53-201ENST00000291074 IL1RAPL1Q9NZN1 696 aa20.67■□□□□ 0.9
VPS53-201ENST00000291074 CAPN9O14815 690 aa20.67■□□□□ 0.9
VPS53-201ENST00000291074 FDFT1P37268 417 aa20.67■□□□□ 0.9
VPS53-201ENST00000291074 MRPS6P82932 125 aaKnown RBP20.67■□□□□ 0.9
VPS53-201ENST00000291074 DPYSQ14117 519 aa20.67■□□□□ 0.9
VPS53-201ENST00000291074 LGSNQ5TDP6 509 aa20.67■□□□□ 0.9
VPS53-201ENST00000291074 RFX8Q6ZV50 586 aa20.67■□□□□ 0.9
VPS53-201ENST00000291074 FAM35AQ86V20 835 aa20.67■□□□□ 0.9
VPS53-201ENST00000291074 ZNF567Q8N184 647 aa20.67■□□□□ 0.9
VPS53-201ENST00000291074 TMEM120AQ9BXJ8 343 aa20.67■□□□□ 0.9
VPS53-201ENST00000291074 FBXO6Q9NRD1 293 aaPredicted RBP20.67■□□□□ 0.9
VPS53-201ENST00000291074 MOCS1Q9NZB8 636 aa20.67■□□□□ 0.9
VPS53-201ENST00000291074 HEY2Q9UBP5 337 aa20.67■□□□□ 0.9
VPS53-201ENST00000291074 CASTOR2A6NHX0 329 aa20.66■□□□□ 0.9
VPS53-201ENST00000291074 I3L4J1 428 aa20.66■□□□□ 0.9
VPS53-201ENST00000291074 USP17L7P0C7H9 530 aa20.66■□□□□ 0.9
VPS53-201ENST00000291074 GNAT1P11488 350 aa20.66■□□□□ 0.9
VPS53-201ENST00000291074 PREPLQ4J6C6 727 aaPredicted RBP20.66■□□□□ 0.9
VPS53-201ENST00000291074 PSTKQ8IV42 348 aaKnown RBP20.66■□□□□ 0.9
VPS53-201ENST00000291074 NDUFAF2Q8N183 169 aa20.66■□□□□ 0.9
VPS53-201ENST00000291074 ZNF398Q8TD17 642 aa20.66■□□□□ 0.9
VPS53-201ENST00000291074 RRAGCQ9HB90 399 aa20.66■□□□□ 0.9
VPS53-201ENST00000291074 SLC8A1P32418 973 aa20.66■□□□□ 0.9
VPS53-201ENST00000291074 DAOAP59103 153 aa20.66■□□□□ 0.9
VPS53-201ENST00000291074 IRF5Q13568 498 aa20.66■□□□□ 0.9
VPS53-201ENST00000291074 CTC1Q2NKJ3 1217 aa20.66■□□□□ 0.9
VPS53-201ENST00000291074 CXCL17Q6UXB2 119 aa20.66■□□□□ 0.9
VPS53-201ENST00000291074 BZW1Q7L1Q6 419 aaKnown RBP20.66■□□□□ 0.9
VPS53-201ENST00000291074 SCNN1GP51170 649 aa20.65■□□□□ 0.9
VPS53-201ENST00000291074 ARFIP2P53365 341 aa20.65■□□□□ 0.9
VPS53-201ENST00000291074 SARNPP82979 210 aaKnown RBP20.65■□□□□ 0.9
VPS53-201ENST00000291074 CES3Q6UWW8 571 aa20.65■□□□□ 0.9
VPS53-201ENST00000291074 ARNTL2Q8WYA1 636 aa20.65■□□□□ 0.9
VPS53-201ENST00000291074 WDR6Q9NNW5 1121 aaKnown RBP20.65■□□□□ 0.9
VPS53-201ENST00000291074 SYBUQ9NX95 663 aa20.65■□□□□ 0.9
VPS53-201ENST00000291074 SNX10Q9Y5X0 201 aa20.65■□□□□ 0.9
VPS53-201ENST00000291074 DCLK1O15075 740 aa20.65■□□□□ 0.9
VPS53-201ENST00000291074 OPHN1O60890 802 aa20.65■□□□□ 0.9
VPS53-201ENST00000291074 ATP5HO75947 161 aa20.65■□□□□ 0.9
VPS53-201ENST00000291074 DLDP09622 509 aaKnown RBP20.65■□□□□ 0.9
VPS53-201ENST00000291074 SERPINB3P29508 390 aa20.65■□□□□ 0.9
VPS53-201ENST00000291074 ADRA1BP35368 520 aa20.65■□□□□ 0.9
VPS53-201ENST00000291074 RGS2P41220 211 aa20.65■□□□□ 0.9
VPS53-201ENST00000291074 GLUD2P49448 558 aa20.65■□□□□ 0.9
VPS53-201ENST00000291074 IRX4P78413 519 aa20.65■□□□□ 0.9
VPS53-201ENST00000291074 PDK1Q15118 436 aa20.65■□□□□ 0.9
VPS53-201ENST00000291074 PAN2Q504Q3 1202 aaKnown RBP20.65■□□□□ 0.9
VPS53-201ENST00000291074 DSTYKQ6XUX3 929 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms