RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 TUBB6Q9BUF5 446 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 TRIM4Q9C037 500 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 MMADHCQ9H3L0 296 aaPredicted RBP10.37□□□□□ -0.75
LIG3-201ENST00000262327 RNPEPQ9H4A4 650 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 PDGFCQ9NRA1 345 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 PNPOQ9NVS9 261 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 KCNK4Q9NYG8 393 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 SEPT10Q9P0V9 454 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 EVPLQ92817 2033 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 ASB14A6NK59 587 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 CIB2O75838 187 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 KRT38O76015 456 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 BPGMP07738 259 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 PFKMP08237 780 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 CD1EP15812 388 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 PGGT1BP53609 377 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 PDE1BQ01064 536 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 MXD4Q14582 209 aaPredicted RBP10.37□□□□□ -0.75
LIG3-201ENST00000262327 SPDYAQ5MJ70 313 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 N4BP2L1Q5TBK1 243 aaPredicted RBP10.37□□□□□ -0.75
LIG3-201ENST00000262327 IRGCQ6NXR0 463 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 KCNT2Q6UVM3 1135 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 METTL7BQ6UX53 244 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 TRIM42Q8IWZ5 723 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 SIGLEC10Q96LC7 697 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 FGD4Q96M96 766 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 ANKRD27Q96NW4 1050 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 LGMNQ99538 433 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 ZNF184Q99676 751 aaPredicted RBP10.37□□□□□ -0.75
LIG3-201ENST00000262327 GPR20Q99678 358 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 FRMD8P1Q9BZ68 369 aaPredicted RBP10.37□□□□□ -0.75
LIG3-201ENST00000262327 WWP1Q9H0M0 922 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 XAB2Q9HCS7 855 aaKnown RBP10.37□□□□□ -0.75
LIG3-201ENST00000262327 MAN1C1Q9NR34 630 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 TAGLN3Q9UI15 199 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 ENDOD1O94919 500 aa10.36□□□□□ -0.75
LIG3-201ENST00000262327 SDC4P31431 198 aa10.36□□□□□ -0.75
LIG3-201ENST00000262327 MBTD1Q05BQ5 628 aa10.36□□□□□ -0.75
LIG3-201ENST00000262327 SURF1Q15526 300 aa10.36□□□□□ -0.75
LIG3-201ENST00000262327 TRIP11Q15643 1979 aa10.36□□□□□ -0.75
LIG3-201ENST00000262327 SLC10A6Q3KNW5 377 aa10.36□□□□□ -0.75
LIG3-201ENST00000262327 GLRA4Q5JXX5 417 aa10.36□□□□□ -0.75
LIG3-201ENST00000262327 LPCAT4Q643R3 524 aa10.36□□□□□ -0.75
LIG3-201ENST00000262327 RAPH1Q70E73 1250 aa10.36□□□□□ -0.75
LIG3-201ENST00000262327 ZNF467Q7Z7K2 595 aaPredicted RBP10.36□□□□□ -0.75
LIG3-201ENST00000262327 TTC30AQ86WT1 665 aa10.36□□□□□ -0.75
LIG3-201ENST00000262327 MAP7D3Q8IWC1 876 aa10.36□□□□□ -0.75
LIG3-201ENST00000262327 GALNT15Q8N3T1 639 aa10.36□□□□□ -0.75
LIG3-201ENST00000262327 MRPL45Q9BRJ2 306 aaKnown RBP10.36□□□□□ -0.75
LIG3-201ENST00000262327 SIRPGQ9P1W8 387 aa10.36□□□□□ -0.75
LIG3-201ENST00000262327 TPP1O14773 563 aa10.36□□□□□ -0.75
LIG3-201ENST00000262327 GABBR2O75899 941 aa10.36□□□□□ -0.75
LIG3-201ENST00000262327 LCP1P13796 627 aa10.36□□□□□ -0.75
LIG3-201ENST00000262327 NCF2P19878 526 aaPredicted RBP10.36□□□□□ -0.75
LIG3-201ENST00000262327 PROZP22891 400 aa10.36□□□□□ -0.75
LIG3-201ENST00000262327 GRM1Q13255 1194 aa10.36□□□□□ -0.75
LIG3-201ENST00000262327 FAM47CQ5HY64 1035 aa10.36□□□□□ -0.75
LIG3-201ENST00000262327 LGSNQ5TDP6 509 aa10.36□□□□□ -0.75
LIG3-201ENST00000262327 CCDC106Q9BWC9 280 aa10.36□□□□□ -0.75
LIG3-201ENST00000262327 OXCT2Q9BYC2 517 aaPredicted RBP10.36□□□□□ -0.75
LIG3-201ENST00000262327 VCXQ9H320 206 aa10.36□□□□□ -0.75
LIG3-201ENST00000262327 FZD8Q9H461 694 aa10.36□□□□□ -0.75
LIG3-201ENST00000262327 PLA2G4CQ9UP65 541 aa10.36□□□□□ -0.75
LIG3-201ENST00000262327 AKT3Q9Y243 479 aa10.36□□□□□ -0.75
LIG3-201ENST00000262327 SNX9Q9Y5X1 595 aa10.36□□□□□ -0.75
LIG3-201ENST00000262327 CCDC78A2IDD5 438 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 ADCY6O43306 1168 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 TM7SF2O76062 418 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 STK10O94804 968 aaKnown RBP10.35□□□□□ -0.75
LIG3-201ENST00000262327 PDGFRBP09619 1106 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 VDRP11473 427 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 PRKCHP24723 683 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 ADORA2BP29275 332 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 CD151P48509 253 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 HDAC4P56524 1084 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 TMEM62Q0P6H9 643 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 SREBF2Q12772 1141 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 DBN1Q16643 649 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 ZNF792Q3KQV3 632 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 TCHHL1Q5QJ38 904 aaPredicted RBP10.35□□□□□ -0.75
LIG3-201ENST00000262327 TP53INP2Q8IXH6 220 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 TNS4Q8IZW8 715 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 GSDMBQ8TAX9 411 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 SLC26A7Q8TE54 656 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 PGBD4Q96DM1 585 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 C7orf26Q96N11 449 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 TUBGCP5Q96RT8 1024 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 EBNA1BP2Q99848 306 aaKnown RBP10.35□□□□□ -0.75
LIG3-201ENST00000262327 TSPYL2Q9H2G4 693 aaPredicted RBP10.35□□□□□ -0.75
LIG3-201ENST00000262327 NRDE2Q9H7Z3 1164 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 NDE1Q9NXR1 346 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 RPL26L1Q9UNX3 145 aaKnown RBP10.35□□□□□ -0.75
LIG3-201ENST00000262327 FAM155AB1AL88 458 aaPredicted RBP10.35□□□□□ -0.75
LIG3-201ENST00000262327 PAPSS1O43252 624 aaPredicted RBP10.35□□□□□ -0.75
LIG3-201ENST00000262327 USP12O75317 370 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 PROCP04070 461 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 ARRB2P32121 409 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 MLH1P40692 756 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 GABRB2P47870 512 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 CUL3Q13618 768 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms