RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 MRASO14807 208 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 TPPPO94811 219 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 PRELPP51888 382 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 HADHBP55084 474 aaKnown RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 CDH6P55285 790 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 DYNLT1P63172 113 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 XRRA1Q6P2D8 792 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 TLDC1Q6P9B6 456 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 ZSCAN2Q7Z7L9 614 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 CHPFQ8IZ52 775 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 PGAM4Q8N0Y7 254 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 PTTG3PQ9NZH4 202 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 EMSYQ7Z589 1322 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 C3orf70A6NLC5 250 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 PRKD3O94806 890 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 CBX6O95503 412 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 GCNT1Q02742 428 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 HSD17B12Q53GQ0 312 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 STXBP5Q5T5C0 1151 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 ACAD10Q6JQN1 1059 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 CRTC3Q6UUV7 619 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 TMEM26Q6ZUK4 368 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 POLNQ7Z5Q5 900 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 MIER2Q8N344 545 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 ROPN1LQ96C74 230 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 SEC14L4Q9UDX3 406 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 PCSK1NQ9UHG2 260 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 PSME2Q9UL46 239 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 RAP2CQ9Y3L5 183 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 ABCC3O15438 1527 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 YAP1P46937 504 aaKnown RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 VBP1P61758 197 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 MAPRE1Q15691 268 aaKnown RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 UGT3A1Q6NUS8 523 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 CENPLQ8N0S6 344 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 IL17REQ8NFR9 667 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 DNAJB8Q8NHS0 232 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 FEZF2Q8TBJ5 459 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 SNX19Q92543 992 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 HAVCR1Q96D42 359 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 FAM84AQ96KN4 292 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 AIFM3Q96NN9 605 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 HNRNPABQ99729 332 aaKnown RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 AIFM2Q9BRQ8 373 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 ZNF577Q9BSK1 485 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 TMCC3Q9ULS5 477 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 ZBTB39O15060 712 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 ZSCAN9O15535 394 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 FOXO3O43524 673 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 CLPXO76031 633 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 IL1BP01584 269 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 ERBB2P04626 1255 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 SLC1A6P48664 564 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 NR2C2P49116 596 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 RPL14P50914 215 aaKnown RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 PTP4A2Q12974 167 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 MYBPC3Q14896 1274 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 EPHA7Q15375 998 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 SPANXN3Q5MJ09 141 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 UNC5BQ8IZJ1 945 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 FITM2Q8N6M3 262 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 NFATC2IPQ8NCF5 419 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 GLG1Q92896 1179 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 C18orf8Q96DM3 657 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 SPATA17Q96L03 361 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 SPRTNQ9H040 489 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 TRPV5Q9NQA5 729 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 H2AFY2Q9P0M6 372 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 MTF2Q9Y483 593 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 OPLAHO14841 1288 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 FAM189A1O60320 539 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 PRMT3O60678 531 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 BMP10O95393 424 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 IFI35P80217 286 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 USP10Q14694 798 aaKnown RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 RBM48Q5RL73 367 aaKnown RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 RRM2BQ7LG56 351 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 THAP5Q7Z6K1 395 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 ZNF605Q86T29 641 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 PRCCQ92733 491 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 CDRT15Q96T59 188 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 GPN1Q9HCN4 374 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 RGS18Q9NS28 235 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 NUDT5Q9UKK9 219 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 ACOT9Q9Y305 439 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 XDHP47989 1333 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 FAM20BO75063 409 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 ASTN2O75129 1339 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 BGNP21810 368 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 NR4A1P22736 598 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 ELP6Q0PNE2 266 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 CDC16Q13042 620 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 EFR3AQ14156 821 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 MYO1HQ8N1T3 1032 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 RNF25Q96BH1 459 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 SLA2Q9H6Q3 261 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 LRRC4BQ9NT99 713 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 SPHKAPQ2M3C7 1700 aa4.78□□□□□ -1.64
SCN1A-220ENST00000641603 UBA6A0AVT1 1052 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-220ENST00000641603 F8W810 466 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms