RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 PRR5-ARHGAP8B1AHC4 643 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 E7ENQ6 273 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 VWA5AO00534 786 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 AP3D1O14617 1153 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 TLR2O60603 784 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 RAD17O75943 681 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 CSPG5O95196 566 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 CSF1RP07333 972 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ALAS1P13196 640 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 HSD3B1P14060 373 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 PCMT1P22061 227 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 SKIV2L2P42285 1042 aaKnown RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 CDK8P49336 464 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 NDST1P52848 882 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ADARP55265 1226 aaKnown RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ACSM2BQ68CK6 577 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ALKBH5Q6P6C2 394 aaKnown RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 STK32CQ86UX6 486 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 Q8N402 240 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 DPP10Q8N608 796 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 PGAP3Q96FM1 320 aaPredicted RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ZFRQ96KR1 1074 aaKnown RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 AK8Q96MA6 479 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ATF6BQ99941 703 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 SLC39A8Q9C0K1 460 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 EFCAB1Q9HAE3 211 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 TRPV5Q9NQA5 729 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 NDUFA13Q9P0J0 144 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ABCC2Q92887 1545 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 GRIN2DO15399 1336 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 LINC00854A0A1B0GVQ3 168 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 FAM92AA1XBS5 289 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 RNF103O00237 685 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ALBP02768 609 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 SERPIND1P05546 499 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 AFF1P51825 1210 aaKnown RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ACLYP53396 1101 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 LBRQ14739 615 aaKnown RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 SPDYE7PQ495Y7 208 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 TTC33Q6PID6 262 aaPredicted RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 GET4Q7L5D6 327 aaPredicted RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 IFNEQ86WN2 208 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 CDC26Q8NHZ8 85 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 GRIN3AQ8TCU5 1115 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 SLC22A18Q96BI1 424 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 AIFM3Q96NN9 605 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 CEP44Q9C0F1 390 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ETNK1Q9HBU6 452 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 TRMT6Q9UJA5 497 aaKnown RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ADAM21Q9UKJ8 722 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 DGKBQ9Y6T7 804 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 PTPN23Q9H3S7 1636 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 SLC35F4A4IF30 521 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 FAM221BA6H8Z2 402 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 CENPXA8MT69 81 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 SLC28A1O00337 649 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 TRIM38O00635 465 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 UBTFL6P0CB48 400 aaPredicted RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 CDC16Q13042 620 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 CASP8Q14790 479 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 RAB39AQ14964 217 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 MAPK11Q15759 364 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 GNASQ5JWF2 1037 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ARL6IP4Q66PJ3 421 aaKnown RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 STRADAQ7RTN6 431 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 TEX19Q8NA77 164 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ZC3H10Q96K80 434 aaKnown RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 MND1Q9BWT6 205 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 TMEM121BQ9BXQ6 578 aaPredicted RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 CIDEBQ9UHD4 219 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 CDK13Q14004 1512 aaKnown RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 SYCP2Q9BX26 1530 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 PRODHO43272 600 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 CYTH3O43739 400 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 MYCP01106 439 aaPredicted RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 EIF4EP06730 217 aaKnown RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ADRM1Q16186 407 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 KLHL22Q53GT1 634 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ATXN7L2Q5T6C5 722 aaPredicted RBP2.85□□□□□ -1.95
SCN1A-219ENST00000641575 KDM7AQ6ZMT4 941 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 TTLL10Q6ZVT0 673 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ZNF280BQ86YH2 543 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 RFX6Q8HWS3 928 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 MINDY2Q8NBR6 621 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 EME1Q96AY2 570 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 REPS1Q96D71 796 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 MED15Q96RN5 788 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 FAM213AQ9BRX8 229 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 BRINP2Q9C0B6 783 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ELOVL6Q9H5J4 265 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ACAD9Q9H845 621 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 POLR1BQ9H9Y6 1135 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 C12orf4Q9NQ89 552 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 SDHAF3Q9NRP4 125 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 CDC14AQ9UNH5 594 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 ADCY10Q96PN6 1610 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 SLC26A4O43511 780 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 CCNDBP1O95273 360 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 S100A2P29034 98 aa2.85□□□□□ -1.95
SCN1A-219ENST00000641575 CHRNA5P30532 468 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms