RNA–Protein interactions for RNA: ENST00000638725.1

SNIP1-204, Transcript of Smad nuclear interacting protein 1, humanhuman

TSL 2

Gene SNIP1, Length 2,761 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-204ENST00000638725 TRAPPC12Q8WVT3 735 aa11.26□□□□□ -0.61
SNIP1-204ENST00000638725 NCSTNQ92542 709 aa11.26□□□□□ -0.61
SNIP1-204ENST00000638725 SORT1Q99523 831 aa11.26□□□□□ -0.61
SNIP1-204ENST00000638725 KLHL4Q9C0H6 718 aa11.26□□□□□ -0.61
SNIP1-204ENST00000638725 IL1RAPL1Q9NZN1 696 aa11.26□□□□□ -0.61
SNIP1-204ENST00000638725 TSPAN16Q9UKR8 245 aa11.26□□□□□ -0.61
SNIP1-204ENST00000638725 ITGA11Q9UKX5 1188 aa11.26□□□□□ -0.61
SNIP1-204ENST00000638725 TBC1D30Q9Y2I9 924 aa11.26□□□□□ -0.61
SNIP1-204ENST00000638725 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.25□□□□□ -0.61
SNIP1-204ENST00000638725 E2F8A0AVK6 867 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 GLRA3O75311 464 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 RAG1P15918 1043 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 PTPRAP18433 802 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 TFE3P19532 575 aaPredicted RBP11.25□□□□□ -0.61
SNIP1-204ENST00000638725 TPSB2P20231 275 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 CYP2F1P24903 491 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 SERPINB6P35237 376 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 DYNC1I2Q13409 638 aaKnown RBP11.25□□□□□ -0.61
SNIP1-204ENST00000638725 LAMB3Q13751 1172 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 TRIP10Q15642 601 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 TPSAB1Q15661 275 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 PACS1Q6VY07 963 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 CDKL3Q8IVW4 592 aaPredicted RBP11.25□□□□□ -0.61
SNIP1-204ENST00000638725 ACTRT2Q8TDY3 377 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 EPAS1Q99814 870 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 SIKE1Q9BRV8 207 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 NRDE2Q9H7Z3 1164 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 MINDY3Q9H8M7 445 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 XPNPEP3Q9NQH7 507 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 POMPQ9Y244 141 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 PSAT1Q9Y617 370 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 GPR25O00155 361 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 ACKR2O00590 384 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 TXNDC9O14530 226 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 SF3B1O75533 1304 aaKnown RBP eCLIP11.25□□□□□ -0.61
SNIP1-204ENST00000638725 SERPINE1P05121 402 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 PRKCGP05129 697 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 PFKMP08237 780 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 NCF2P19878 526 aaPredicted RBP11.25□□□□□ -0.61
SNIP1-204ENST00000638725 ITGAXP20702 1163 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 NDST1P52848 882 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 MXD4Q14582 209 aaPredicted RBP11.25□□□□□ -0.61
SNIP1-204ENST00000638725 FRMD7Q6ZUT3 714 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 PHTF2Q8N3S3 785 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 C12orf29Q8N999 325 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 TFB1MQ8WVM0 346 aaKnown RBP11.25□□□□□ -0.61
SNIP1-204ENST00000638725 OLFM3Q96PB7 478 aa11.25□□□□□ -0.61
SNIP1-204ENST00000638725 STN1Q9H668 368 aaKnown RBP11.25□□□□□ -0.61
SNIP1-204ENST00000638725 GBA2Q9HCG7 927 aaPredicted RBP11.25□□□□□ -0.61
SNIP1-204ENST00000638725 SPDYE16A6NNV3 312 aaPredicted RBP11.24□□□□□ -0.61
SNIP1-204ENST00000638725 ADCY6O43306 1168 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 CSDE1O75534 798 aaKnown RBP11.24□□□□□ -0.61
SNIP1-204ENST00000638725 VCLP18206 1134 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 ATXN1P54253 815 aaKnown RBP11.24□□□□□ -0.61
SNIP1-204ENST00000638725 BTKQ06187 659 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 LY6KQ17RY6 165 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 PPM1JQ5JR12 505 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 PRAMEF18Q5VWM3 479 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 KCNT2Q6UVM3 1135 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 NCAPG2Q86XI2 1143 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 CXorf38Q8TB03 319 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 SEPT1Q8WYJ6 367 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 JDP2Q8WYK2 163 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 JADE3Q92613 823 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 CLMNQ96JQ2 1002 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 WRNIP1Q96S55 665 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 ZNF670Q9BS34 389 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 C2orf40Q9H1Z8 148 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 AS3MTQ9HBK9 375 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 ZBTB42B2RXF5 422 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 ZNF195O14628 629 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 GCATO75600 419 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 SPATA31D3P0C874 917 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 CNTFP26441 200 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 SDC4P31431 198 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 NIPAL4Q0D2K0 466 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 TBL3Q12788 808 aaKnown RBP11.24□□□□□ -0.61
SNIP1-204ENST00000638725 DBN1Q16643 649 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 SLC5A9Q2M3M2 681 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 MMEL1Q495T6 779 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 FBXL19Q6PCT2 694 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 OLFML1Q6UWY5 402 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 CATSPERGQ6ZRH7 1159 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 SPATA31D4Q6ZUB0 917 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 DNERQ8NFT8 737 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 PPP4R1Q8TF05 950 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 NDNQ99608 321 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 OXCT2Q9BYC2 517 aaPredicted RBP11.24□□□□□ -0.61
SNIP1-204ENST00000638725 UBE2OQ9C0C9 1292 aaKnown RBP11.24□□□□□ -0.61
SNIP1-204ENST00000638725 VCX3BQ9H321 246 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 FZD8Q9H461 694 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 RNPEPQ9H4A4 650 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 OCEL1Q9H607 264 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 VCX3AQ9NNX9 186 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 ZNF358Q9NW07 568 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 DNAJC28Q9NX36 388 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 TMEM216Q9P0N5 145 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 PACSIN3Q9UKS6 424 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 MFHAS1Q9Y4C4 1052 aa11.24□□□□□ -0.61
SNIP1-204ENST00000638725 A6NJR5 290 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms