RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 NPEPPSP55786 919 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 MRPS22P82650 360 aaKnown RBP5.89□□□□□ -1.47
SCN1A-216ENST00000637968 ILF2Q12905 390 aaKnown RBP5.89□□□□□ -1.47
SCN1A-216ENST00000637968 NAB1Q13506 487 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 CACHD1Q5VU97 1274 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 HGSNATQ68CP4 663 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 HAUS6Q7Z4H7 955 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 ADAMTSL2Q86TH1 951 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 C12orf56Q8IXR9 622 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 OXER1Q8TDS5 423 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 TMIGD2Q96BF3 282 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 ALPK1Q96QP1 1244 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 MYD88Q99836 296 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 GON7Q9BXV9 100 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 HOXD1Q9GZZ0 328 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 RBM38Q9H0Z9 239 aaKnown RBP5.89□□□□□ -1.47
SCN1A-216ENST00000637968 VPS11Q9H270 941 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 ZFYVE28Q9HCC9 887 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 LRP2BPQ9P2M1 347 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 SFMBT1Q9UHJ3 866 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 ACAD8Q9UKU7 415 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 GRID1Q9ULK0 1009 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 BTBD3Q9Y2F9 522 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 TESMINQ9Y4I5 508 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 ABCC6O95255 1503 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 RPTORQ8N122 1335 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 A0A087X0T9 212 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 PRR23AA6NEV1 266 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 PRPF4O43172 522 aaKnown RBP eCLIP5.89□□□□□ -1.47
SCN1A-216ENST00000637968 KATNA1O75449 491 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 SEC24AO95486 1093 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 MUTP22033 750 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 RPA3P35244 121 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-216ENST00000637968 HPCAL1P37235 193 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 COILP38432 576 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-216ENST00000637968 GDI2P50395 445 aaKnown RBP5.89□□□□□ -1.47
SCN1A-216ENST00000637968 RPS6P62753 249 aaKnown RBP5.89□□□□□ -1.47
SCN1A-216ENST00000637968 BNIP2Q12982 314 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 NR5A1Q13285 461 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 RINT1Q6NUQ1 792 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 TMEM26Q6ZUK4 368 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 SLCO6A1Q86UG4 719 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 FAM47BQ8NA70 645 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 RIN3Q8TB24 985 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 PBXIP1Q96AQ6 731 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 DMRTB1Q96MA1 342 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 APOL4Q9BPW4 351 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 NMUR2Q9GZQ4 415 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 SAV1Q9H4B6 383 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-216ENST00000637968 ZBTB3Q9H5J0 574 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 SNRKQ9NRH2 765 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 DNAJC11Q9NVH1 559 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 SERPINB13Q9UIV8 391 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 SALL4Q9UJQ4 1053 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 ADAMTS6Q9UKP5 1117 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 MAST1Q9Y2H9 1570 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 KRT87PA6NCN2 255 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 TMEM191CA6NGB0 347 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 BTN3A1O00481 513 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 ANGPT2O15123 496 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 RGS20O76081 388 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 TMEM191BP0C7N4 346 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 ZNF182P17025 639 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-216ENST00000637968 HOXC9P31274 260 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 HSD17B2P37059 387 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 SLC26A3P40879 764 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 GSTO1P78417 241 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 CD300CQ08708 224 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 C19orf57Q0VDD7 668 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 TRIM32Q13049 653 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 SELENBP1Q13228 472 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 TFDP1Q14186 410 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 ADGRE1Q14246 886 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 TAF5Q15542 800 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 Q3C1V9 767 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 PAGE2BQ5JRK9 111 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 METTL11BQ5VVY1 283 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 CGB2Q6NT52 195 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 SV2BQ7L1I2 683 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 RASGEF1CQ8N431 466 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 TBC1D19Q8N5T2 526 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 KIAA1958Q8N8K9 716 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 GALNT11Q8NCW6 608 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 PSD4Q8NDX1 1056 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 RFFLQ8WZ73 363 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 POMGNT1Q8WZA1 660 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 ZNF285Q96NJ3 590 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 SECISBP2Q96T21 854 aaKnown RBP5.89□□□□□ -1.47
SCN1A-216ENST00000637968 TARS2Q9BW92 718 aaKnown RBP5.89□□□□□ -1.47
SCN1A-216ENST00000637968 IDI2Q9BXS1 227 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 KCNN2Q9H2S1 579 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 ERVMER34-1Q9H9K5 563 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 ZDHHC18Q9NUE0 388 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 PAQR5Q9NXK6 330 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-216ENST00000637968 PCDH10Q9P2E7 1040 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 LGALS13Q9UHV8 139 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 PTBP2Q9UKA9 531 aaKnown RBP5.89□□□□□ -1.47
SCN1A-216ENST00000637968 BAIAP2Q9UQB8 552 aa5.89□□□□□ -1.47
SCN1A-216ENST00000637968 RAB19A4D1S5 217 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 SLC22A1O15245 554 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms