RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 DUSP4Q13115 394 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 SLMAPQ14BN4 828 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 MORF4L2Q15014 288 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 PAFAH1B3Q15102 231 aaKnown RBP10.95□□□□□ -0.66
CLN3-248ENST00000636355 TRIP4Q15650 581 aaPredicted RBP10.95□□□□□ -0.66
CLN3-248ENST00000636355 CA9Q16790 459 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 DDR2Q16832 855 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 RAB6CQ53S08 254 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 RASIP1Q5U651 963 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 RFX8Q6ZV50 586 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 GSTA5Q7RTV2 222 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 TAS1R1Q7RTX1 841 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 TMC3Q7Z5M5 1100 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 ITIH5Q86UX2 942 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 HOOK3Q86VS8 718 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 RELL1Q8IUW5 271 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 C7orf61Q8IZ16 206 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 VPS52Q8N1B4 723 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 TTC9BQ8N6N2 239 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 IFT81Q8WYA0 676 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 NDRG1Q92597 394 aaKnown RBP10.95□□□□□ -0.66
CLN3-248ENST00000636355 EDEM1Q92611 657 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 ART4Q93070 314 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 SAMD11Q96NU1 681 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 OLFM3Q96PB7 478 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 QKIQ96PU8 341 aaKnown RBP eCLIP10.95□□□□□ -0.66
CLN3-248ENST00000636355 ZBED2Q9BTP6 218 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 FRMD8Q9BZ67 464 aaPredicted RBP10.95□□□□□ -0.66
CLN3-248ENST00000636355 RAB6CQ9H0N0 254 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 MED4Q9NPJ6 270 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.95□□□□□ -0.66
CLN3-248ENST00000636355 GPATCH2LQ9NWQ4 482 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 CWC15Q9P013 229 aaKnown RBP10.95□□□□□ -0.66
CLN3-248ENST00000636355 HBS1LQ9Y450 684 aaKnown RBP10.95□□□□□ -0.66
CLN3-248ENST00000636355 YIPF1Q9Y548 306 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 ASB3Q9Y575 518 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 SLC38A8A6NNN8 435 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 C5orf67F2Z3F1 127 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 SGK1O00141 431 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 PPP1R12AO14974 1030 aaPredicted RBP10.94□□□□□ -0.66
CLN3-248ENST00000636355 DCLK1O15075 740 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 LILRB3O75022 631 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 PPFIA2O75334 1257 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 KRT14P02533 472 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 APOEP02649 317 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 ADH1AP07327 375 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 PECAM1P16284 738 aaPredicted RBP10.94□□□□□ -0.66
CLN3-248ENST00000636355 ATP2A2P16615 1042 aaKnown RBP10.94□□□□□ -0.66
CLN3-248ENST00000636355 IVDP26440 423 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 ACTN2P35609 894 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 ALDH1A3P47895 512 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 KCNJ1P48048 391 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 ATXN1P54253 815 aaKnown RBP10.94□□□□□ -0.66
CLN3-248ENST00000636355 ARPP19P56211 112 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 MMRN1Q13201 1228 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 SNX1Q13596 522 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 PDK1Q15118 436 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 P3H1Q32P28 736 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 SLC45A4Q5BKX6 768 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 CFAP58Q5T655 872 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 MANEALQ5VSG8 457 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 ALS2CLQ60I27 953 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 NUGGCQ68CJ6 796 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 NCBP2-AS2Q69YL0 99 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 RHBDF2Q6PJF5 856 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 ZDHHC24Q6UX98 284 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 LRRC49Q8IUZ0 686 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 LZTR1Q8N653 840 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 STKLD1Q8NE28 680 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 RSAD2Q8WXG1 361 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 SLC39A13Q96H72 371 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 C1orf74Q96LT6 269 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 LBHD1Q9BQE6 289 aaPredicted RBP10.94□□□□□ -0.66
CLN3-248ENST00000636355 TKTL2Q9H0I9 626 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 DPH5Q9H2P9 285 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 CRISPLD1Q9H336 500 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 GMIPQ9P107 970 aa10.94□□□□□ -0.66
CLN3-248ENST00000636355 KCNU1A8MYU2 1149 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 DNALI1O14645 258 aaPredicted RBP10.93□□□□□ -0.66
CLN3-248ENST00000636355 ADAM12O43184 909 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 TLL1O43897 1013 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 STK10O94804 968 aaKnown RBP10.93□□□□□ -0.66
CLN3-248ENST00000636355 RB1P06400 928 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 GOT1P17174 413 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 PFKLP17858 780 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 MX2P20592 715 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 ELF1P32519 619 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 ADCY8P40145 1251 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 GPR15P49685 360 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 EPHB3P54753 998 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 USP46P62068 366 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 TAF10Q12962 218 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 CBLBQ13191 982 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 PDE12Q6L8Q7 609 aaKnown RBP10.93□□□□□ -0.66
CLN3-248ENST00000636355 FAM117BQ6P1L5 589 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 LRIG3Q6UXM1 1119 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 CCDC149Q6ZUS6 474 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 CROCCP2Q86T23 111 aa10.93□□□□□ -0.66
CLN3-248ENST00000636355 GSPT2Q8IYD1 628 aaKnown RBP10.93□□□□□ -0.66
CLN3-248ENST00000636355 GOLGA6L1Q8N7Z2 621 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms