RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 BUD23O43709 281 aaKnown RBP9.49□□□□□ -0.89
GGA3-223ENST00000621870 EFCAB14O75071 495 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 SOAT2O75908 522 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 GLP2RO95838 553 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 LAG3P18627 525 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 ALDH18A1P54886 795 aaKnown RBP9.49□□□□□ -0.89
GGA3-223ENST00000621870 KCNMA1Q12791 1236 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 SH3D19Q5HYK7 790 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 C9orf57Q5W0N0 161 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 FAM183BPQ6ZVS7 135 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 DSG4Q86SJ6 1040 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 TTC7BQ86TV6 843 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 FAM71AQ8IYT1 594 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 CHPFQ8IZ52 775 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 ARNTL2Q8WYA1 636 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 SMG7Q92540 1137 aaKnown RBP9.49□□□□□ -0.89
GGA3-223ENST00000621870 LENG9Q96B70 501 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 EXOC2Q96KP1 924 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 PRMT1Q99873 361 aaKnown RBP9.49□□□□□ -0.89
GGA3-223ENST00000621870 MRPL45Q9BRJ2 306 aaKnown RBP9.49□□□□□ -0.89
GGA3-223ENST00000621870 B3GNT5Q9BYG0 378 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 NIFKQ9BYG3 293 aaKnown RBP9.49□□□□□ -0.89
GGA3-223ENST00000621870 NFKBIZQ9BYH8 718 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 ASPSCR1Q9BZE9 553 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 STN1Q9H668 368 aaKnown RBP9.49□□□□□ -0.89
GGA3-223ENST00000621870 GOLGA8TH3BQL2 631 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 MYO1CO00159 1063 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 ANGPT2O15123 496 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 KDM1AO60341 852 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 PPP1R37O75864 691 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 ARIH2O95376 493 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 IGSF6O95976 241 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 CHN1P15882 459 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 RBL1P28749 1068 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 APLP1P51693 650 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 TAF10Q12962 218 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 PPIGQ13427 754 aaKnown RBP eCLIP9.49□□□□□ -0.894e-7■■■□□ 17.7
GGA3-223ENST00000621870 HYIQ5T013 277 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 C1orf146Q5VVC0 180 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 LVRNQ6Q4G3 990 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 RFX8Q6ZV50 586 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 STRA8Q7Z7C7 330 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 NPLOC4Q8TAT6 608 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 FAM111AQ96PZ2 611 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 BBS2Q9BXC9 721 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 SFMBT1Q9UHJ3 866 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 DNPEPQ9ULA0 475 aa9.49□□□□□ -0.89
GGA3-223ENST00000621870 MAFBQ9Y5Q3 323 aaPredicted RBP9.49□□□□□ -0.89
GGA3-223ENST00000621870 RNF103-CHMP3A0A140T963 221 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 LOC100653049A0A140TA62 436 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 OR6C75A6NL08 312 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 SIGLEC16A6NMB1 481 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 ERI2A8K979 691 aaKnown RBP9.48□□□□□ -0.89
GGA3-223ENST00000621870 KRT34O76011 436 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 VAPBO95292 243 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 STMN1P16949 149 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 RPL17P18621 184 aaKnown RBP9.48□□□□□ -0.89
GGA3-223ENST00000621870 BOP1Q14137 746 aaKnown RBP9.48□□□□□ -0.89
GGA3-223ENST00000621870 AGAP9Q5VTM2 703 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 DAB2IPQ5VWQ8 1189 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 ERAP2Q6P179 960 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 PKN3Q6P5Z2 889 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 KIAA1324Q6UXG2 1013 aaKnown RBP9.48□□□□□ -0.89
GGA3-223ENST00000621870 TRMT11Q7Z4G4 463 aaKnown RBP9.48□□□□□ -0.89
GGA3-223ENST00000621870 CCNJLQ8IV13 435 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 NETO2Q8NC67 525 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 CASKIN2Q8WXE0 1202 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 SGSM3Q96HU1 749 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 PAWRQ96IZ0 340 aaKnown RBP9.48□□□□□ -0.89
GGA3-223ENST00000621870 FAM161BQ96MY7 647 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 TLR10Q9BXR5 811 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 FRMD8P1Q9BZ68 369 aaPredicted RBP9.48□□□□□ -0.89
GGA3-223ENST00000621870 PABPC3Q9H361 631 aaKnown RBP9.48□□□□□ -0.89
GGA3-223ENST00000621870 CAPN10Q9HC96 672 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 ZSCAN5CA6NGD5 496 aaPredicted RBP9.48□□□□□ -0.89
GGA3-223ENST00000621870 B4GALT4O60513 344 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 TSPAN1O60635 241 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 CCDC22O60826 627 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 SKAP2O75563 359 aaPredicted RBP9.48□□□□□ -0.89
GGA3-223ENST00000621870 AARSP49588 968 aaKnown RBP eCLIP9.48□□□□□ -0.89
GGA3-223ENST00000621870 CLCNKBP51801 687 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 BTKQ06187 659 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 CDH17Q12864 832 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 BMPR2Q13873 1038 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 UGT3A1Q6NUS8 523 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 TSHZ1Q6ZSZ6 1077 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 NAT16Q8N8M0 369 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 C1orf127Q8N9H9 656 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 SEMA4DQ92854 862 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 SNRNP25Q9BV90 132 aaKnown RBP9.48□□□□□ -0.89
GGA3-223ENST00000621870 GPAMQ9HCL2 828 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 PTCH2Q9Y6C5 1203 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 TIMM44O43615 452 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 ENO3P13929 434 aaPredicted RBP9.48□□□□□ -0.89
GGA3-223ENST00000621870 VCLP18206 1134 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 ARHGDIAP52565 204 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 CUL3Q13618 768 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 ACOX1Q15067 660 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 TRADDQ15628 312 aa9.48□□□□□ -0.89
GGA3-223ENST00000621870 HSP90AA5PQ58FG0 334 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms