RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 MARK1Q9P0L2 795 aa17.2■□□□□ 0.34
CCDC28A-202ENST00000611852 NDRG2Q9UN36 371 aaKnown RBP17.2■□□□□ 0.34
CCDC28A-202ENST00000611852 FAM170BA6NMN3 283 aa17.19■□□□□ 0.34
CCDC28A-202ENST00000611852 TRDMT1O14717 391 aaKnown RBP17.19■□□□□ 0.34
CCDC28A-202ENST00000611852 ATMINO43313 823 aaPredicted RBP17.19■□□□□ 0.34
CCDC28A-202ENST00000611852 PI15O43692 258 aa17.19■□□□□ 0.34
CCDC28A-202ENST00000611852 ACSL4O60488 711 aa17.19■□□□□ 0.34
CCDC28A-202ENST00000611852 ADCY5O95622 1261 aa17.19■□□□□ 0.34
CCDC28A-202ENST00000611852 APOEP02649 317 aa17.19■□□□□ 0.34
CCDC28A-202ENST00000611852 PDGFRAP16234 1089 aa17.19■□□□□ 0.34
CCDC28A-202ENST00000611852 TARSP26639 723 aaKnown RBP17.19■□□□□ 0.34
CCDC28A-202ENST00000611852 CCR1P32246 355 aa17.19■□□□□ 0.34
CCDC28A-202ENST00000611852 OPRD1P41143 372 aa17.19■□□□□ 0.34
CCDC28A-202ENST00000611852 SLC11A2P49281 568 aa17.19■□□□□ 0.34
CCDC28A-202ENST00000611852 PPP2R5DQ14738 602 aa17.19■□□□□ 0.34
CCDC28A-202ENST00000611852 ANO4Q32M45 955 aa17.19■□□□□ 0.34
CCDC28A-202ENST00000611852 PLEKHA7Q6IQ23 1121 aa17.19■□□□□ 0.34
CCDC28A-202ENST00000611852 ALKBH5Q6P6C2 394 aaKnown RBP17.19■□□□□ 0.34
CCDC28A-202ENST00000611852 BNIPLQ7Z465 357 aa17.19■□□□□ 0.34
CCDC28A-202ENST00000611852 P2RY11Q96G91 374 aa17.19■□□□□ 0.34
CCDC28A-202ENST00000611852 BBS2Q9BXC9 721 aa17.19■□□□□ 0.34
CCDC28A-202ENST00000611852 FBRSL1Q9HCM7 1045 aaKnown RBP17.19■□□□□ 0.34
CCDC28A-202ENST00000611852 NENFQ9UMX5 172 aa17.19■□□□□ 0.34
CCDC28A-202ENST00000611852 SIT1Q9Y3P8 196 aa17.19■□□□□ 0.34
CCDC28A-202ENST00000611852 KCNU1A8MYU2 1149 aa17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 NEDD8-MDP1E9PL57 170 aa17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 GFRA2O00451 464 aa17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 MOCS2O96007 188 aaPredicted RBP17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 F9P00740 461 aa17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 SLC2A3P11169 496 aa17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 CDC25BP30305 580 aa17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 SDC4P31431 198 aa17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 PTPN9P43378 593 aa17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 CXCR3P49682 368 aa17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 GALK1P51570 392 aa17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 RPL7AP62424 266 aaKnown RBP17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 GFPT1Q06210 699 aaPredicted RBP17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 FZD5Q13467 585 aa17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 MAMLD1Q13495 774 aa17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 SLC18A3Q16572 532 aa17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 CCDC14Q49A88 953 aa17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 FAM133BQ5BKY9 247 aaKnown RBP17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 TMEM196Q5HYL7 178 aa17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 NADSYN1Q6IA69 706 aa17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 C12orf40Q86WS4 652 aa17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 SUGP1Q8IWZ8 645 aaKnown RBP17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 CCDC105Q8IYK2 499 aa17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 RNF34Q969K3 372 aa17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 ZNF653Q96CK0 615 aa17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 TRIM11Q96F44 468 aa17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 BTN2A3PQ96KV6 586 aa17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 MCEEQ96PE7 176 aa17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 P2RY13Q9BPV8 354 aa17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 PARVAQ9NVD7 372 aa17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 CNOT8Q9UFF9 292 aaKnown RBP17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 XPO7Q9UIA9 1087 aaKnown RBP17.18■□□□□ 0.34
CCDC28A-202ENST00000611852 GOLGA6L7A0A1B0GV03 622 aa17.17■□□□□ 0.34
CCDC28A-202ENST00000611852 ENDOD1O94919 500 aa17.17■□□□□ 0.34
CCDC28A-202ENST00000611852 PENKP01210 267 aaPredicted RBP17.17■□□□□ 0.34
CCDC28A-202ENST00000611852 MYBL1P10243 752 aa17.17■□□□□ 0.34
CCDC28A-202ENST00000611852 TYRP14679 529 aa17.17■□□□□ 0.34
CCDC28A-202ENST00000611852 SLC6A4P31645 630 aa17.17■□□□□ 0.34
CCDC28A-202ENST00000611852 DEKP35659 375 aaKnown RBP17.17■□□□□ 0.34
CCDC28A-202ENST00000611852 EIF2DP41214 584 aaKnown RBP17.17■□□□□ 0.34
CCDC28A-202ENST00000611852 SLC6A11P48066 632 aa17.17■□□□□ 0.34
CCDC28A-202ENST00000611852 ATP11AP98196 1134 aa17.17■□□□□ 0.34
CCDC28A-202ENST00000611852 DEUP1Q05D60 604 aa17.17■□□□□ 0.34
CCDC28A-202ENST00000611852 CCDC122Q5T0U0 273 aa17.17■□□□□ 0.34
CCDC28A-202ENST00000611852 FYB2Q5VWT5 728 aa17.17■□□□□ 0.34
CCDC28A-202ENST00000611852 ETFBKMTQ8IXQ9 262 aa17.17■□□□□ 0.34
CCDC28A-202ENST00000611852 NAT16Q8N8M0 369 aa17.17■□□□□ 0.34
CCDC28A-202ENST00000611852 TMEM105Q8N8V8 129 aa17.17■□□□□ 0.34
CCDC28A-202ENST00000611852 CD101Q93033 1021 aa17.17■□□□□ 0.34
CCDC28A-202ENST00000611852 BHMTQ93088 406 aa17.17■□□□□ 0.34
CCDC28A-202ENST00000611852 DEF6Q9H4E7 631 aa17.17■□□□□ 0.34
CCDC28A-202ENST00000611852 NHEJ1Q9H9Q4 299 aaPredicted RBP17.17■□□□□ 0.34
CCDC28A-202ENST00000611852 TMEM51Q9NW97 253 aa17.17■□□□□ 0.34
CCDC28A-202ENST00000611852 PLK2Q9NYY3 685 aa17.17■□□□□ 0.34
CCDC28A-202ENST00000611852 MIA3Q5JRA6 1907 aa17.17■□□□□ 0.34
CCDC28A-202ENST00000611852 CACNG3O60359 315 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 ABCB4P21439 1286 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 GPD1P21695 349 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 RDXP35241 583 aaKnown RBP17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 ATXN1P54253 815 aaKnown RBP17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 CCINQ13939 588 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 C15orf59Q2T9L4 293 aaPredicted RBP17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 SH3PXD2AQ5TCZ1 1133 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 FSTL4Q6MZW2 842 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 RFWD3Q6PCD5 774 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 DCUN1D2Q6PH85 259 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 SND1Q7KZF4 910 aaKnown RBP eCLIP17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 ATP6V0D2Q8N8Y2 350 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 CENPIQ92674 756 aaPredicted RBP17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 CLDN23Q96B33 292 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 CCDC42Q96M95 316 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 ARHGEF38Q9NXL2 777 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 DLGAP2Q9P1A6 1054 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 SLC12A6Q9UHW9 1150 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 ANKRD62A6NC57 917 aa17.16■□□□□ 0.34
CCDC28A-202ENST00000611852 NCAM2O15394 837 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms