RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 PCDHB4Q9Y5E5 795 aa7.96□□□□□ -1.14
CUX1-219ENST00000606749 ATXN2Q99700 1313 aaKnown RBP7.96□□□□□ -1.14
CUX1-219ENST00000606749 CNOT1A5YKK6 2376 aaKnown RBP7.95□□□□□ -1.14
CUX1-219ENST00000606749 TNRC6BQ9UPQ9 1833 aaKnown RBP7.95□□□□□ -1.14
CUX1-219ENST00000606749 UPK3BL1B0FP48 263 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 KCNJ18B7U540 433 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 UPK3BL2E5RIL1 263 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 PIK3R2O00459 728 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 ARHGAP33O14559 1287 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 P4HA2O15460 535 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 SYNCRIPO60506 623 aaKnown RBP7.95□□□□□ -1.14
CUX1-219ENST00000606749 TSPAN3O60637 253 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 CALCAP01258 141 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 NCAM1P13591 858 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 MAOBP27338 520 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 HOXD9P28356 352 aaPredicted RBP7.95□□□□□ -1.14
CUX1-219ENST00000606749 CD6P30203 668 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 PI4KAP42356 2102 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 RGS7P49802 495 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 CETN1Q12798 172 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 SEMA3BQ13214 749 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 MORC3Q14149 939 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 ZNF234Q14588 700 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 STARD3Q14849 445 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 EIF4HQ15056 248 aaKnown RBP7.95□□□□□ -1.14
CUX1-219ENST00000606749 SYCP2LQ5T4T6 812 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 ADGRF1Q5T601 910 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 KLHL10Q6JEL2 608 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 MSANTD2Q6P1R3 559 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 FOXR2Q6PJQ5 311 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 KIAA1324Q6UXG2 1013 aaKnown RBP7.95□□□□□ -1.14
CUX1-219ENST00000606749 RRAGAQ7L523 313 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 ANKS1BQ7Z6G8 1248 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 RABEPKQ7Z6M1 372 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 KIAA0907Q7Z7F0 614 aaPredicted RBP7.95□□□□□ -1.14
CUX1-219ENST00000606749 PIP4P1Q86T03 277 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 SIX6OS1Q8N1H7 587 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 PPM1KQ8N3J5 372 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 EHBP1Q8NDI1 1231 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 DEFB124Q8NES8 71 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 NELFBQ8WX92 580 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 IRGQQ8WZA9 623 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 FOXJ1Q92949 421 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 TOE1Q96GM8 510 aaKnown RBP7.95□□□□□ -1.14
CUX1-219ENST00000606749 HSFY1Q96LI6 401 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 NT5C1BQ96P26 610 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 GTPBP2Q9BX10 602 aaKnown RBP7.95□□□□□ -1.14
CUX1-219ENST00000606749 CIPCQ9C0C6 399 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.95□□□□□ -1.14
CUX1-219ENST00000606749 CEP192Q8TEP8 1941 aa7.95□□□□□ -1.14
CUX1-219ENST00000606749 GOLGA6L7A0A1B0GV03 622 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 BICDL2A1A5D9 508 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 M0QYV0 167 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 MSI1O43347 362 aaKnown RBP7.94□□□□□ -1.14
CUX1-219ENST00000606749 OPHN1O60890 802 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 LATS1O95835 1130 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 TOP3BO95985 862 aaKnown RBP7.94□□□□□ -1.14
CUX1-219ENST00000606749 IGLV3-19P01714 112 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 IGLV3-27P01718 113 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 LTFP02788 710 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 EPHX1P07099 455 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 SYPP08247 313 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 GNSP15586 552 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 PRKCHP24723 683 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 BRD2P25440 801 aaKnown RBP7.94□□□□□ -1.14
CUX1-219ENST00000606749 HLA-FP30511 346 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 TPMTP51580 245 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 SGSHP51688 502 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 COPAP53621 1224 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 ATXN3P54252 364 aaPredicted RBP7.94□□□□□ -1.14
CUX1-219ENST00000606749 ZNF445P59923 1031 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 GCNT1Q02742 428 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 ARID5AQ03989 594 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 ZNF252P-AS1Q0IIN9 211 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 KCNH2Q12809 1159 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 FOXC1Q12948 553 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 CAMK2GQ13555 558 aaPredicted RBP7.94□□□□□ -1.14
CUX1-219ENST00000606749 STILQ15468 1287 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 PLEKHG6Q3KR16 790 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 MPP7Q5T2T1 576 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 PIK3R6Q5UE93 754 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 RFWD3Q6PCD5 774 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 SERPINA13PQ6UXR4 307 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 ADIPOR2Q86V24 386 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 ARHGEF19Q8IW93 802 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 TRIM59Q8IWR1 403 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 UNC45BQ8IWX7 931 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 SCUBE3Q8IX30 993 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 RGL4Q8IZJ4 473 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 HDDC3Q8N4P3 179 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 CADM4Q8NFZ8 388 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 OR2I1PQ8NGU4 316 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 CLEC4CQ8WTT0 213 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 CYB5D2Q8WUJ1 264 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 DNASE2BQ8WZ79 361 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 PRCCQ92733 491 aaPredicted RBP7.94□□□□□ -1.14
CUX1-219ENST00000606749 AZIN2Q96A70 460 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 SIPA1Q96FS4 1042 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 NUP58Q9BVL2 599 aa7.94□□□□□ -1.14
CUX1-219ENST00000606749 GPR174Q9BXC1 333 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms