RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 TMEM35BQ8NCS4 154 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 TTC16Q8NEE8 873 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 SLC2A14Q8TDB8 520 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 SH3RF2Q8TEC5 729 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 CTNNBL1Q8WYA6 563 aaPredicted RBP13.27□□□□□ -0.29
UPF1-208ENST00000600012 ZNF653Q96CK0 615 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 CEP295NLQ96MC4 621 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 CYP2S1Q96SQ9 504 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 IRX2Q9BZI1 471 aaPredicted RBP13.27□□□□□ -0.29
UPF1-208ENST00000600012 TSGA10Q9BZW7 698 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 DNAI2Q9GZS0 605 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 VPS45Q9NRW7 570 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 EBF1Q9UH73 591 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 CYTH4Q9UIA0 394 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 SALL4Q9UJQ4 1053 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 CDH9Q9ULB4 789 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 INTUQ9ULD6 942 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 ARHGAP26Q9UNA1 814 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 PAXBP1Q9Y5B6 917 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 THADAQ6YHU6 1953 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 ABCA7Q8IZY2 2146 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 C2orf78A6NCI8 922 aa13.26□□□□□ -0.29
UPF1-208ENST00000600012 CLDN5O00501 218 aa13.26□□□□□ -0.29
UPF1-208ENST00000600012 BUB1O43683 1085 aa13.26□□□□□ -0.29
UPF1-208ENST00000600012 RHOBTB1O94844 696 aa13.26□□□□□ -0.29
UPF1-208ENST00000600012 MOCS3O95396 460 aa13.26□□□□□ -0.29
UPF1-208ENST00000600012 PFKLP17858 780 aa13.26□□□□□ -0.29
UPF1-208ENST00000600012 HDCP19113 662 aa13.26□□□□□ -0.29
UPF1-208ENST00000600012 MMS22LQ6ZRQ5 1243 aa13.26□□□□□ -0.29
UPF1-208ENST00000600012 MON1BQ7L1V2 547 aa13.26□□□□□ -0.29
UPF1-208ENST00000600012 PHLDB2Q86SQ0 1253 aa13.26□□□□□ -0.29
UPF1-208ENST00000600012 PHF13Q86YI8 300 aaPredicted RBP13.26□□□□□ -0.29
UPF1-208ENST00000600012 MCOLN2Q8IZK6 566 aa13.26□□□□□ -0.29
UPF1-208ENST00000600012 EZH1Q92800 747 aaPredicted RBP13.26□□□□□ -0.29
UPF1-208ENST00000600012 MYLPFQ96A32 169 aa13.26□□□□□ -0.29
UPF1-208ENST00000600012 SPATA17Q96L03 361 aa13.26□□□□□ -0.29
UPF1-208ENST00000600012 MED10Q9BTT4 135 aa13.26□□□□□ -0.29
UPF1-208ENST00000600012 DUSP15Q9H1R2 295 aaPredicted RBP13.26□□□□□ -0.29
UPF1-208ENST00000600012 LHX5Q9H2C1 402 aa13.26□□□□□ -0.29
UPF1-208ENST00000600012 RXFP3Q9NSD7 469 aa13.26□□□□□ -0.29
UPF1-208ENST00000600012 POLR3BQ9NW08 1133 aaPredicted RBP13.26□□□□□ -0.29
UPF1-208ENST00000600012 EHD2Q9NZN4 543 aa13.26□□□□□ -0.29
UPF1-208ENST00000600012 MYO1AQ9UBC5 1043 aa13.26□□□□□ -0.29
UPF1-208ENST00000600012 TJP2Q9UDY2 1190 aa13.26□□□□□ -0.29
UPF1-208ENST00000600012 CHORDC1Q9UHD1 332 aaPredicted RBP13.26□□□□□ -0.29
UPF1-208ENST00000600012 ANGPTL2Q9UKU9 493 aa13.26□□□□□ -0.29
UPF1-208ENST00000600012 CAPN6Q9Y6Q1 641 aa13.26□□□□□ -0.29
UPF1-208ENST00000600012 TULP2O00295 520 aa13.25□□□□□ -0.29
UPF1-208ENST00000600012 NFATC1O95644 943 aa13.25□□□□□ -0.29
UPF1-208ENST00000600012 PMLP29590 882 aa13.25□□□□□ -0.29
UPF1-208ENST00000600012 GPD2P43304 727 aa13.25□□□□□ -0.29
UPF1-208ENST00000600012 PTP4A2Q12974 167 aa13.25□□□□□ -0.29
UPF1-208ENST00000600012 PTPN20Q4JDL3 420 aa13.25□□□□□ -0.29
UPF1-208ENST00000600012 PKDCCQ504Y2 493 aa13.25□□□□□ -0.29
UPF1-208ENST00000600012 DENND5BQ6ZUT9 1274 aa13.25□□□□□ -0.29
UPF1-208ENST00000600012 PAQR9Q6ZVX9 377 aa13.25□□□□□ -0.29
UPF1-208ENST00000600012 FAM35AQ86V20 835 aa13.25□□□□□ -0.29
UPF1-208ENST00000600012 C11orf74Q86VG3 221 aa13.25□□□□□ -0.29
UPF1-208ENST00000600012 FUKQ8N0W3 1084 aa13.25□□□□□ -0.29
UPF1-208ENST00000600012 RFFLQ8WZ73 363 aa13.25□□□□□ -0.29
UPF1-208ENST00000600012 PCED1BQ96HM7 432 aa13.25□□□□□ -0.29
UPF1-208ENST00000600012 B3GNT5Q9BYG0 378 aa13.25□□□□□ -0.29
UPF1-208ENST00000600012 ADAM22Q9P0K1 906 aa13.25□□□□□ -0.29
UPF1-208ENST00000600012 HESX1Q9UBX0 185 aa13.25□□□□□ -0.29
UPF1-208ENST00000600012 CNOT8Q9UFF9 292 aaKnown RBP13.25□□□□□ -0.29
UPF1-208ENST00000600012 USP24Q9UPU5 2620 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 BTNL10A8MVZ5 291 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 TRIM66O15016 1216 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 KIF5CO60282 957 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 CYP1A2P05177 515 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 TNNT1P13805 278 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 MMP8P22894 467 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 BDNFP23560 247 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 RRM1P23921 792 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 GRIK1P39086 918 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 NOP2P46087 812 aaKnown RBP13.24□□□□□ -0.29
UPF1-208ENST00000600012 RGS7P49802 495 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 DGKEP52429 567 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 BCAT1P54687 386 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 NAP1L1P55209 391 aaKnown RBP13.24□□□□□ -0.29
UPF1-208ENST00000600012 GNG11P61952 73 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 SHC2P98077 582 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 CREB5Q02930 508 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 C1QBPQ07021 282 aaKnown RBP13.24□□□□□ -0.29
UPF1-208ENST00000600012 PDE4CQ08493 712 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 PDCLQ13371 301 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 ZNF569Q5MCW4 686 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 N4BP2L1Q5TBK1 243 aaPredicted RBP13.24□□□□□ -0.29
UPF1-208ENST00000600012 RNF43Q68DV7 783 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 PPP1R2P3Q6NXS1 205 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 ERICH1Q86X53 443 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 SLC35F6Q8N357 371 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 KIAA1958Q8N8K9 716 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 ANKRD52Q8NB46 1076 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 TSTD1Q8NFU3 115 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 CPXM1Q96SM3 734 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 HNRNPABQ99729 332 aaKnown RBP13.24□□□□□ -0.29
UPF1-208ENST00000600012 ZNF518BQ9C0D4 1074 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 SMOC1Q9H4F8 434 aa13.24□□□□□ -0.29
UPF1-208ENST00000600012 OSGEPQ9NPF4 335 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms