RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	LRRC4	Q9HBW1	653 aa		11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	DNAAF2	Q9NVR5	837 aa	Known RBP	11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	SFMBT1	Q9UHJ3	866 aa		11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	COQ4	Q9Y3A0	265 aa		11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	ATP6V1D	Q9Y5K8	247 aa		11.01	□□□□□ -0.65
LSM4-205	ENST00000597776	FREM2	Q5SZK8	3169 aa		11.01	□□□□□ -0.65
LSM4-205	ENST00000597776		O00370	1275 aa		11	□□□□□ -0.65
LSM4-205	ENST00000597776	PIK3R2	O00459	728 aa		11	□□□□□ -0.65
LSM4-205	ENST00000597776	NPC1	O15118	1278 aa		11	□□□□□ -0.65
LSM4-205	ENST00000597776	SH3BP5	O60239	455 aa		11	□□□□□ -0.65
LSM4-205	ENST00000597776	GJB3	O75712	270 aa		11	□□□□□ -0.65
LSM4-205	ENST00000597776	NCAM1	P13591	858 aa		11	□□□□□ -0.65
LSM4-205	ENST00000597776	HLA-E	P13747	358 aa		11	□□□□□ -0.65
LSM4-205	ENST00000597776	GNS	P15586	552 aa		11	□□□□□ -0.65
LSM4-205	ENST00000597776	HARS2	P49590	506 aa	Known RBP	11	□□□□□ -0.65
LSM4-205	ENST00000597776	SGSH	P51688	502 aa		11	□□□□□ -0.65
LSM4-205	ENST00000597776	COPA	P53621	1224 aa		11	□□□□□ -0.65
LSM4-205	ENST00000597776	BST2	Q10589	180 aa	Known RBP	11	□□□□□ -0.65
LSM4-205	ENST00000597776	EIF4H	Q15056	248 aa	Known RBP	11	□□□□□ -0.65
LSM4-205	ENST00000597776	WDR45B	Q5MNZ6	344 aa		11	□□□□□ -0.65
LSM4-205	ENST00000597776	ZNF658	Q5TYW1	1059 aa	Predicted RBP	11	□□□□□ -0.65
LSM4-205	ENST00000597776	BSPRY	Q5W0U4	402 aa		11	□□□□□ -0.65
LSM4-205	ENST00000597776	SERPINA13P	Q6UXR4	307 aa		11	□□□□□ -0.65
LSM4-205	ENST00000597776	METTL3	Q86U44	580 aa	Known RBP	11	□□□□□ -0.65
LSM4-205	ENST00000597776	FAM124A	Q86V42	546 aa		11	□□□□□ -0.65
LSM4-205	ENST00000597776	SIX6OS1	Q8N1H7	587 aa		11	□□□□□ -0.65
LSM4-205	ENST00000597776	ZCCHC9	Q8N567	271 aa	Known RBP	11	□□□□□ -0.65
LSM4-205	ENST00000597776	UBR7	Q8N806	425 aa		11	□□□□□ -0.65
LSM4-205	ENST00000597776	ZNF366	Q8N895	744 aa		11	□□□□□ -0.65
LSM4-205	ENST00000597776	KDF1	Q8NAX2	398 aa	Predicted RBP	11	□□□□□ -0.65
LSM4-205	ENST00000597776	RNF139	Q8WU17	664 aa		11	□□□□□ -0.65
LSM4-205	ENST00000597776	CYB5D2	Q8WUJ1	264 aa		11	□□□□□ -0.65
LSM4-205	ENST00000597776	TFAP2B	Q92481	460 aa		11	□□□□□ -0.65
LSM4-205	ENST00000597776	PRCC	Q92733	491 aa	Predicted RBP	11	□□□□□ -0.65
LSM4-205	ENST00000597776	SLC35C1	Q96A29	364 aa		11	□□□□□ -0.65
LSM4-205	ENST00000597776	SIPA1	Q96FS4	1042 aa		11	□□□□□ -0.65
LSM4-205	ENST00000597776	SLC2A11	Q9BYW1	496 aa		11	□□□□□ -0.65
LSM4-205	ENST00000597776	MIR1-1HG	Q9H1L0	117 aa		11	□□□□□ -0.65
LSM4-205	ENST00000597776	ITM2C	Q9NQX7	267 aa		11	□□□□□ -0.65
LSM4-205	ENST00000597776	RMND1	Q9NWS8	449 aa		11	□□□□□ -0.65
LSM4-205	ENST00000597776	WSB2	Q9NYS7	404 aa	Predicted RBP	11	□□□□□ -0.65
LSM4-205	ENST00000597776	HESX1	Q9UBX0	185 aa		11	□□□□□ -0.65
LSM4-205	ENST00000597776	SUSD2	Q9UGT4	822 aa		11	□□□□□ -0.65
LSM4-205	ENST00000597776	ARMCX3	Q9UH62	379 aa	Predicted RBP	11	□□□□□ -0.65
LSM4-205	ENST00000597776	HBS1L	Q9Y450	684 aa	Known RBP	11	□□□□□ -0.65
LSM4-205	ENST00000597776	DMXL2	Q8TDJ6	3036 aa		10.99	□□□□□ -0.65
LSM4-205	ENST00000597776	GABBR2	O75899	941 aa		10.99	□□□□□ -0.65
LSM4-205	ENST00000597776	CALCA	P01258	141 aa		10.99	□□□□□ -0.65
LSM4-205	ENST00000597776	EPHX1	P07099	455 aa		10.99	□□□□□ -0.65
LSM4-205	ENST00000597776	VDR	P11473	427 aa		10.99	□□□□□ -0.65
LSM4-205	ENST00000597776	LCP1	P13796	627 aa		10.99	□□□□□ -0.65
LSM4-205	ENST00000597776	HLA-F	P30511	346 aa		10.99	□□□□□ -0.65
LSM4-205	ENST00000597776	RGS7	P49802	495 aa		10.99	□□□□□ -0.65
LSM4-205	ENST00000597776	ZNF132	P52740	706 aa		10.99	□□□□□ -0.65
LSM4-205	ENST00000597776	FKBP3	Q00688	224 aa	Known RBP	10.99	□□□□□ -0.65
LSM4-205	ENST00000597776	ARID5A	Q03989	594 aa		10.99	□□□□□ -0.65
LSM4-205	ENST00000597776	PKDCC	Q504Y2	493 aa		10.99	□□□□□ -0.65
LSM4-205	ENST00000597776	MPPE1	Q53F39	396 aa		10.99	□□□□□ -0.65
LSM4-205	ENST00000597776	DCAF12L1	Q5VU92	463 aa		10.99	□□□□□ -0.65
LSM4-205	ENST00000597776	CHCHD4	Q8N4Q1	142 aa		10.99	□□□□□ -0.65
LSM4-205	ENST00000597776	ZCCHC14	Q8WYQ9	949 aa	Known RBP	10.99	□□□□□ -0.65
LSM4-205	ENST00000597776	DNASE2B	Q8WZ79	361 aa		10.99	□□□□□ -0.65
LSM4-205	ENST00000597776	KAT5	Q92993	513 aa		10.99	□□□□□ -0.65
LSM4-205	ENST00000597776	CCDC34	Q96HJ3	373 aa		10.99	□□□□□ -0.65
LSM4-205	ENST00000597776	IL21R	Q9HBE5	538 aa		10.99	□□□□□ -0.65
LSM4-205	ENST00000597776	OLA1	Q9NTK5	396 aa	Known RBP	10.99	□□□□□ -0.65
LSM4-205	ENST00000597776	ABCB8	Q9NUT2	735 aa		10.99	□□□□□ -0.65
LSM4-205	ENST00000597776	NEUROG3	Q9Y4Z2	214 aa		10.99	□□□□□ -0.65
LSM4-205	ENST00000597776	SLCO1B1	Q9Y6L6	691 aa		10.99	□□□□□ -0.65
LSM4-205	ENST00000597776	MUC22	E2RYF6	1773 aa	Predicted RBP	10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	CKAP5	Q14008	2032 aa		10.98	□□□□□ -0.65
LSM4-205	ENST00000597776		A0A1B0GTW7	788 aa		10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	RNF225	M0QZC1	329 aa	Predicted RBP	10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	IGLV3-19	P01714	112 aa		10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	SETSIP	P0DME0	302 aa		10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	ACADM	P11310	421 aa		10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	BRD2	P25440	801 aa	Known RBP	10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	OXTR	P30559	389 aa		10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	DAOA	P59103	153 aa		10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	YWHAE	P62258	255 aa	Known RBP	10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	BNC1	Q01954	994 aa		10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	FNDC3B	Q53EP0	1204 aa	Known RBP	10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	COBLL1	Q53SF7	1204 aa		10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	ADGRF1	Q5T601	910 aa		10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	ISM2	Q6H9L7	571 aa		10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	RFWD3	Q6PCD5	774 aa		10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	TMEM270	Q6UE05	265 aa		10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	CHST9	Q7L1S5	443 aa		10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	NAXD	Q8IW45	347 aa		10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	CADM4	Q8NFZ8	388 aa		10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	WFDC5	Q8TCV5	224 aa		10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	CLEC4C	Q8WTT0	213 aa		10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	KCTD13	Q8WZ19	329 aa		10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	SMARCE1	Q969G3	411 aa		10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	GSDMA	Q96QA5	445 aa		10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	ZSWIM1	Q9BR11	485 aa		10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	NUP58	Q9BVL2	599 aa		10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	EIF2B4	Q9UI10	523 aa	Known RBP	10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	MSRB2	Q9Y3D2	182 aa		10.98	□□□□□ -0.65
LSM4-205	ENST00000597776	PCDHB4	Q9Y5E5	795 aa		10.98	□□□□□ -0.65

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