RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 OTOL1A6NHN0 477 aaPredicted RBP8.45□□□□□ -1.06
SMAD4-209ENST00000589941 I3L4J1 428 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 SH3BP5O60239 455 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 TADA2AO75478 443 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 PRAMEF12O95522 483 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 LRG1P02750 347 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 GLI4P10075 376 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 MYL4P12829 197 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 RXRAP19793 462 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 SREBF1P36956 1147 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 DGKEP52429 567 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 ANTXR2P58335 489 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 ROR1Q01973 937 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 GRIK3Q13003 919 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 TESK1Q15569 626 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 ZNF124Q15973 351 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 NTRK3Q16288 839 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 TMEM196Q5HYL7 178 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 CCDC183Q5T5S1 534 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 PLA2G4FQ68DD2 849 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 WWC2Q6AWC2 1192 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 PDZD4Q76G19 769 aaPredicted RBP8.45□□□□□ -1.06
SMAD4-209ENST00000589941 CDR2LQ86X02 465 aaPredicted RBP8.45□□□□□ -1.06
SMAD4-209ENST00000589941 CAMKK1Q8N5S9 505 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 GJA10Q969M2 543 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 DNAJC7Q99615 494 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 SGPP1Q9BX95 441 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 TM6SF1Q9BZW5 370 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 SPTLC3Q9NUV7 552 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 CEP72Q9P209 647 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 PCDHA10Q9Y5I2 948 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 INSL5Q9Y5Q6 135 aa8.45□□□□□ -1.06
SMAD4-209ENST00000589941 A0A1W2PQJ5 194 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 BLACEA4D250 179 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 FAM149AA5PLN7 773 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 IFIT3O14879 490 aaKnown RBP8.44□□□□□ -1.06
SMAD4-209ENST00000589941 CHMP2AO43633 222 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 TSPAN1O60635 241 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 APBB3O95704 486 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 FUCA1P04066 466 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 FAM153BP0C7A2 387 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 TKTP29401 623 aaKnown RBP8.44□□□□□ -1.06
SMAD4-209ENST00000589941 NT5C2P49902 561 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 SRSF3P84103 164 aaKnown RBP8.44□□□□□ -1.06
SMAD4-209ENST00000589941 IFRD2Q12894 506 aaPredicted RBP8.44□□□□□ -1.06
SMAD4-209ENST00000589941 LMAN2Q12907 356 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 DMC1Q14565 340 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 TRIP6Q15654 476 aaKnown RBP8.44□□□□□ -1.06
SMAD4-209ENST00000589941 NAB2Q15742 525 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 IQCEQ6IPM2 695 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 C1orf228Q6PIY5 440 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 HEATR3Q7Z4Q2 680 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 TEX2Q8IWB9 1127 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 YAF2Q8IY57 180 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 SMAP1Q8IYB5 467 aaPredicted RBP8.44□□□□□ -1.06
SMAD4-209ENST00000589941 MINDY1Q8N5J2 469 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 RPLP0P6Q8NHW5 317 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 PLEKHO2Q8TD55 490 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 CRYGNQ8WXF5 182 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 TMEM209Q96SK2 561 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 ZNF577Q9BSK1 485 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 POLR3CQ9BUI4 534 aaPredicted RBP8.44□□□□□ -1.06
SMAD4-209ENST00000589941 NUSAP1Q9BXS6 441 aaKnown RBP8.44□□□□□ -1.06
SMAD4-209ENST00000589941 KRTAP9-2Q9BYQ4 174 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 SLITRK6Q9H5Y7 841 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 GCM1Q9NP62 436 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 MARCH2Q9P0N8 246 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 COL4A3BPQ9Y5P4 624 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 SNX14Q9Y5W7 946 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 BSNQ9UPA5 3926 aa8.44□□□□□ -1.06
SMAD4-209ENST00000589941 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.43□□□□□ -1.06
SMAD4-209ENST00000589941 ZC3H12DA2A288 527 aaKnown RBP8.43□□□□□ -1.06
SMAD4-209ENST00000589941 TRABD2BA6NFA1 517 aa8.43□□□□□ -1.06
SMAD4-209ENST00000589941 PRRG1O14668 218 aa8.43□□□□□ -1.06
SMAD4-209ENST00000589941 PTGESO14684 152 aa8.43□□□□□ -1.06
SMAD4-209ENST00000589941 TLX3O43711 291 aaPredicted RBP8.43□□□□□ -1.06
SMAD4-209ENST00000589941 CFIP05156 583 aa8.43□□□□□ -1.06
SMAD4-209ENST00000589941 ZSCAN22P10073 491 aaPredicted RBP8.43□□□□□ -1.06
SMAD4-209ENST00000589941 BCL6P41182 706 aa8.43□□□□□ -1.06
SMAD4-209ENST00000589941 UBE2HP62256 183 aa8.43□□□□□ -1.06
SMAD4-209ENST00000589941 KCNAB2Q13303 367 aa8.43□□□□□ -1.06
SMAD4-209ENST00000589941 COLEC12Q5KU26 742 aa8.43□□□□□ -1.06
SMAD4-209ENST00000589941 CD300LGQ6UXG3 332 aa8.43□□□□□ -1.06
SMAD4-209ENST00000589941 TOGARAM2Q6ZUX3 1019 aa8.43□□□□□ -1.06
SMAD4-209ENST00000589941 USP53Q70EK8 1073 aa8.43□□□□□ -1.06
SMAD4-209ENST00000589941 NIPA1Q7RTP0 329 aa8.43□□□□□ -1.06
SMAD4-209ENST00000589941 TMC8Q8IU68 726 aa8.43□□□□□ -1.06
SMAD4-209ENST00000589941 FMNL3Q8IVF7 1028 aa8.43□□□□□ -1.06
SMAD4-209ENST00000589941 TMEFF1Q8IYR6 380 aa8.43□□□□□ -1.06
SMAD4-209ENST00000589941 RLN3Q8WXF3 142 aa8.43□□□□□ -1.06
SMAD4-209ENST00000589941 LENG9Q96B70 501 aa8.43□□□□□ -1.06
SMAD4-209ENST00000589941 FNBP1Q96RU3 617 aa8.43□□□□□ -1.06
SMAD4-209ENST00000589941 TRIM4Q9C037 500 aa8.43□□□□□ -1.06
SMAD4-209ENST00000589941 INO80BQ9C086 356 aaPredicted RBP8.43□□□□□ -1.06
SMAD4-209ENST00000589941 HPS4Q9NQG7 708 aa8.43□□□□□ -1.06
SMAD4-209ENST00000589941 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.43□□□□□ -1.06
SMAD4-209ENST00000589941 PLA2G2DQ9UNK4 145 aa8.43□□□□□ -1.06
SMAD4-209ENST00000589941 TIMM13Q9Y5L4 95 aaPredicted RBP8.43□□□□□ -1.06
SMAD4-209ENST00000589941 NPFFR2Q9Y5X5 522 aa8.43□□□□□ -1.06
SMAD4-209ENST00000589941 LRRK2Q5S007 2527 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms