RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 SFPQP23246 707 aaKnown RBP eCLIP7.25□□□□□ -1.25
SS18-214ENST00000580003 AKT1P31749 480 aa7.25□□□□□ -1.25
SS18-214ENST00000580003 HOXD12P35452 270 aa7.25□□□□□ -1.25
SS18-214ENST00000580003 SPARCL1Q14515 664 aa7.25□□□□□ -1.25
SS18-214ENST00000580003 KYAT3Q6YP21 454 aaKnown RBP7.25□□□□□ -1.25
SS18-214ENST00000580003 MYLK4Q86YV6 388 aaPredicted RBP7.25□□□□□ -1.25
SS18-214ENST00000580003 UEVLDQ8IX04 471 aa7.25□□□□□ -1.25
SS18-214ENST00000580003 PIGKQ92643 395 aa7.25□□□□□ -1.25
SS18-214ENST00000580003 TRIM2Q9C040 744 aa7.25□□□□□ -1.25
SS18-214ENST00000580003 OBP2BQ9NPH6 170 aa7.25□□□□□ -1.25
SS18-214ENST00000580003 PLCB1Q9NQ66 1216 aa7.25□□□□□ -1.25
SS18-214ENST00000580003 RNF7Q9UBF6 113 aa7.25□□□□□ -1.25
SS18-214ENST00000580003 NFU1Q9UMS0 254 aa7.25□□□□□ -1.25
SS18-214ENST00000580003 DAAM1Q9Y4D1 1078 aa7.25□□□□□ -1.25
SS18-214ENST00000580003 COL3A1P02461 1466 aaPredicted RBP7.24□□□□□ -1.25
SS18-214ENST00000580003 GXYLT2A0PJZ3 443 aa7.24□□□□□ -1.25
SS18-214ENST00000580003 M0QZQ0 153 aa7.24□□□□□ -1.25
SS18-214ENST00000580003 PRYO14603 147 aa7.24□□□□□ -1.25
SS18-214ENST00000580003 CER1O95813 267 aa7.24□□□□□ -1.25
SS18-214ENST00000580003 AGTR2P50052 363 aa7.24□□□□□ -1.25
SS18-214ENST00000580003 ZNF91Q05481 1191 aa7.24□□□□□ -1.25
SS18-214ENST00000580003 GAB1Q13480 694 aa7.24□□□□□ -1.25
SS18-214ENST00000580003 KLF9Q13886 244 aaPredicted RBP7.24□□□□□ -1.25
SS18-214ENST00000580003 GLE1Q53GS7 698 aaKnown RBP7.24□□□□□ -1.25
SS18-214ENST00000580003 FAM71BQ8TC56 605 aa7.24□□□□□ -1.25
SS18-214ENST00000580003 CELF1Q92879 486 aaKnown RBP7.24□□□□□ -1.25
SS18-214ENST00000580003 ZNF778Q96MU6 729 aa7.24□□□□□ -1.25
SS18-214ENST00000580003 FCRL5Q96RD9 977 aa7.24□□□□□ -1.25
SS18-214ENST00000580003 C1QTNF7Q9BXJ2 289 aa7.24□□□□□ -1.25
SS18-214ENST00000580003 TUBA8Q9NY65 449 aaPredicted RBP7.24□□□□□ -1.25
SS18-214ENST00000580003 PCDHB7Q9Y5E2 793 aa7.24□□□□□ -1.25
SS18-214ENST00000580003 C16orf96A6NNT2 1141 aa7.23□□□□□ -1.25
SS18-214ENST00000580003 RRHO14718 337 aa7.23□□□□□ -1.25
SS18-214ENST00000580003 DNPH1O43598 174 aa7.23□□□□□ -1.25
SS18-214ENST00000580003 PLAUP00749 431 aa7.23□□□□□ -1.25
SS18-214ENST00000580003 KLRK1P26718 216 aa7.23□□□□□ -1.25
SS18-214ENST00000580003 ICA1Q05084 483 aa7.23□□□□□ -1.25
SS18-214ENST00000580003 MTA1Q13330 715 aa7.23□□□□□ -1.25
SS18-214ENST00000580003 OS9Q13438 667 aaPredicted RBP7.23□□□□□ -1.25
SS18-214ENST00000580003 PTK2BQ14289 1009 aa7.23□□□□□ -1.25
SS18-214ENST00000580003 ETFDHQ16134 617 aa7.23□□□□□ -1.25
SS18-214ENST00000580003 SLC9C1Q4G0N8 1177 aa7.23□□□□□ -1.25
SS18-214ENST00000580003 Q4G0T1 1027 aa7.23□□□□□ -1.25
SS18-214ENST00000580003 PXDC1Q5TGL8 231 aa7.23□□□□□ -1.25
SS18-214ENST00000580003 ANKRD40Q6AI12 368 aa7.23□□□□□ -1.25
SS18-214ENST00000580003 C16orf89Q6UX73 402 aa7.23□□□□□ -1.25
SS18-214ENST00000580003 TRABD2AQ86V40 505 aa7.23□□□□□ -1.25
SS18-214ENST00000580003 STYXQ8WUJ0 223 aa7.23□□□□□ -1.25
SS18-214ENST00000580003 NPIPB3Q92617 1050 aa7.23□□□□□ -1.25
SS18-214ENST00000580003 ZNF845Q96IR2 970 aaPredicted RBP7.23□□□□□ -1.25
SS18-214ENST00000580003 SIGLEC11Q96RL6 698 aa7.23□□□□□ -1.25
SS18-214ENST00000580003 CRB3Q9BUF7 120 aa7.23□□□□□ -1.25
SS18-214ENST00000580003 ELOVL1Q9BW60 279 aa7.23□□□□□ -1.25
SS18-214ENST00000580003 TM2D2Q9BX73 214 aa7.23□□□□□ -1.25
SS18-214ENST00000580003 VPS16Q9H269 839 aa7.23□□□□□ -1.25
SS18-214ENST00000580003 TP63Q9H3D4 680 aaPredicted RBP7.23□□□□□ -1.25
SS18-214ENST00000580003 KCNK9Q9NPC2 374 aa7.23□□□□□ -1.25
SS18-214ENST00000580003 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.22□□□□□ -1.25
SS18-214ENST00000580003 LGALS16A8MUM7 142 aa7.22□□□□□ -1.25
SS18-214ENST00000580003 F5H423 210 aaPredicted RBP7.22□□□□□ -1.25
SS18-214ENST00000580003 LMO1P25800 156 aa7.22□□□□□ -1.25
SS18-214ENST00000580003 THBS4P35443 961 aa7.22□□□□□ -1.25
SS18-214ENST00000580003 RPS13P62277 151 aaKnown RBP7.22□□□□□ -1.25
SS18-214ENST00000580003 ID2Q02363 134 aa7.22□□□□□ -1.25
SS18-214ENST00000580003 CFHR1Q03591 330 aa7.22□□□□□ -1.25
SS18-214ENST00000580003 STIM1Q13586 685 aa7.22□□□□□ -1.25
SS18-214ENST00000580003 MORC3Q14149 939 aa7.22□□□□□ -1.25
SS18-214ENST00000580003 PUM3Q15397 648 aaKnown RBP7.22□□□□□ -1.25
SS18-214ENST00000580003 PFKFB4Q16877 469 aa7.22□□□□□ -1.25
SS18-214ENST00000580003 WDR93Q6P2C0 686 aa7.22□□□□□ -1.25
SS18-214ENST00000580003 TFAP2DQ7Z6R9 452 aa7.22□□□□□ -1.25
SS18-214ENST00000580003 LAS2Q8IYD9 372 aa7.22□□□□□ -1.25
SS18-214ENST00000580003 SPICE1Q8N0Z3 855 aa7.22□□□□□ -1.25
SS18-214ENST00000580003 SRFBP1Q8NEF9 429 aaKnown RBP7.22□□□□□ -1.25
SS18-214ENST00000580003 PIGOQ8TEQ8 1089 aa7.22□□□□□ -1.25
SS18-214ENST00000580003 ASB12Q8WXK4 309 aa7.22□□□□□ -1.25
SS18-214ENST00000580003 P2RY11Q96G91 374 aa7.22□□□□□ -1.25
SS18-214ENST00000580003 REXO5Q96IC2 774 aaKnown RBP7.22□□□□□ -1.25
SS18-214ENST00000580003 PRDM16Q9HAZ2 1276 aa7.22□□□□□ -1.25
SS18-214ENST00000580003 AGO4Q9HCK5 861 aaKnown RBP7.22□□□□□ -1.25
SS18-214ENST00000580003 TRNAU1APQ9NX07 287 aaKnown RBP7.22□□□□□ -1.25
SS18-214ENST00000580003 INO80B-WBP1J3KQ70 363 aa7.21□□□□□ -1.26
SS18-214ENST00000580003 RPP40O75818 363 aaKnown RBP7.21□□□□□ -1.26
SS18-214ENST00000580003 ENO1P06733 434 aaKnown RBP7.21□□□□□ -1.26
SS18-214ENST00000580003 RPS6KB1P23443 525 aa7.21□□□□□ -1.26
SS18-214ENST00000580003 STAT6P42226 847 aa7.21□□□□□ -1.26
SS18-214ENST00000580003 CPA2P48052 419 aa7.21□□□□□ -1.26
SS18-214ENST00000580003 PLCD1P51178 756 aa7.21□□□□□ -1.26
SS18-214ENST00000580003 RHBDL3P58872 404 aa7.21□□□□□ -1.26
SS18-214ENST00000580003 AAK1Q2M2I8 961 aa7.21□□□□□ -1.26
SS18-214ENST00000580003 ZACNQ401N2 412 aa7.21□□□□□ -1.26
SS18-214ENST00000580003 ZNF569Q5MCW4 686 aa7.21□□□□□ -1.26
SS18-214ENST00000580003 RBM44Q6ZP01 1051 aaKnown RBP7.21□□□□□ -1.26
SS18-214ENST00000580003 VPS37AQ8NEZ2 397 aa7.21□□□□□ -1.26
SS18-214ENST00000580003 ADAM10O14672 748 aa7.2□□□□□ -1.26
SS18-214ENST00000580003 NKX2-8O15522 239 aa7.2□□□□□ -1.26
SS18-214ENST00000580003 TNFRSF6BO95407 300 aa7.2□□□□□ -1.26
SS18-214ENST00000580003 IDUAP35475 653 aa7.2□□□□□ -1.26
SS18-214ENST00000580003 ZNF84P51523 738 aa7.2□□□□□ -1.26
SS18-214ENST00000580003 SLC12A2P55011 1212 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 94.9 ms