RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 AKAP13Q12802 2813 aa22.03■■□□□ 1.12
VPS53-216ENST00000574029 MUC22E2RYF6 1773 aaPredicted RBP22.03■■□□□ 1.12
VPS53-216ENST00000574029 METTL12A8MUP2 240 aa22.03■■□□□ 1.12
VPS53-216ENST00000574029 TULP2O00295 520 aa22.03■■□□□ 1.12
VPS53-216ENST00000574029 XPO1O14980 1071 aaKnown RBP22.03■■□□□ 1.12
VPS53-216ENST00000574029 CETN3O15182 167 aa22.03■■□□□ 1.12
VPS53-216ENST00000574029 PDE4CQ08493 712 aa22.03■■□□□ 1.12
VPS53-216ENST00000574029 GOLGA7BQ2TAP0 167 aa22.03■■□□□ 1.12
VPS53-216ENST00000574029 MPPE1Q53F39 396 aa22.03■■□□□ 1.12
VPS53-216ENST00000574029 DCAF12L1Q5VU92 463 aa22.03■■□□□ 1.12
VPS53-216ENST00000574029 NAXDQ8IW45 347 aa22.03■■□□□ 1.12
VPS53-216ENST00000574029 SORCS1Q8WY21 1168 aa22.03■■□□□ 1.12
VPS53-216ENST00000574029 NDRG1Q92597 394 aaKnown RBP22.03■■□□□ 1.12
VPS53-216ENST00000574029 NUP58Q9BVL2 599 aa22.03■■□□□ 1.12
VPS53-216ENST00000574029 CIPCQ9C0C6 399 aa22.03■■□□□ 1.12
VPS53-216ENST00000574029 SCAND2PQ9GZW5 306 aaPredicted RBP22.03■■□□□ 1.12
VPS53-216ENST00000574029 TSPAN16Q9UKR8 245 aa22.03■■□□□ 1.12
VPS53-216ENST00000574029 COQ4Q9Y3A0 265 aa22.03■■□□□ 1.12
VPS53-216ENST00000574029 HOXD9P28356 352 aaPredicted RBP22.02■■□□□ 1.12
VPS53-216ENST00000574029 BCAT1P54687 386 aa22.02■■□□□ 1.12
VPS53-216ENST00000574029 CBWD6Q4V339 395 aa22.02■■□□□ 1.12
VPS53-216ENST00000574029 CBWD3Q5JTY5 395 aa22.02■■□□□ 1.12
VPS53-216ENST00000574029 CBWD5Q5RIA9 395 aa22.02■■□□□ 1.12
VPS53-216ENST00000574029 FMNL3Q8IVF7 1028 aa22.02■■□□□ 1.12
VPS53-216ENST00000574029 ZCCHC9Q8N567 271 aaKnown RBP22.02■■□□□ 1.12
VPS53-216ENST00000574029 LRRC4Q9HBW1 653 aa22.02■■□□□ 1.12
VPS53-216ENST00000574029 STOML2Q9UJZ1 356 aa22.02■■□□□ 1.12
VPS53-216ENST00000574029 HBS1LQ9Y450 684 aaKnown RBP22.02■■□□□ 1.12
VPS53-216ENST00000574029 PCDHB9Q9Y5E1 797 aa22.02■■□□□ 1.12
VPS53-216ENST00000574029 EPHX1P07099 455 aa22.01■■□□□ 1.11
VPS53-216ENST00000574029 C7P10643 843 aa22.01■■□□□ 1.11
VPS53-216ENST00000574029 ACADMP11310 421 aa22.01■■□□□ 1.11
VPS53-216ENST00000574029 HARS2P49590 506 aaKnown RBP22.01■■□□□ 1.11
VPS53-216ENST00000574029 ZNF445P59923 1031 aa22.01■■□□□ 1.11
VPS53-216ENST00000574029 BST2Q10589 180 aaKnown RBP22.01■■□□□ 1.11
VPS53-216ENST00000574029 CUL2Q13617 745 aa22.01■■□□□ 1.11
VPS53-216ENST00000574029 SGO2Q562F6 1265 aa22.01■■□□□ 1.11
VPS53-216ENST00000574029 SERPINA13PQ6UXR4 307 aa22.01■■□□□ 1.11
VPS53-216ENST00000574029 ADAMTS14Q8WXS8 1223 aa22.01■■□□□ 1.11
VPS53-216ENST00000574029 MIR1-1HGQ9H1L0 117 aa22.01■■□□□ 1.11
VPS53-216ENST00000574029 IGF2RP11717 2491 aa22.01■■□□□ 1.11
VPS53-216ENST00000574029 CAPNS1P04632 268 aa22■■□□□ 1.11
VPS53-216ENST00000574029 HLA-FP30511 346 aa22■■□□□ 1.11
VPS53-216ENST00000574029 ARID5AQ03989 594 aa22■■□□□ 1.11
VPS53-216ENST00000574029 ADIGQ0VDE8 80 aa22■■□□□ 1.11
VPS53-216ENST00000574029 CAMK2GQ13555 558 aaPredicted RBP22■■□□□ 1.11
VPS53-216ENST00000574029 BSPRYQ5W0U4 402 aa22■■□□□ 1.11
VPS53-216ENST00000574029 ZC3H3Q8IXZ2 948 aaKnown RBP22■■□□□ 1.11
VPS53-216ENST00000574029 OR2T3Q8NH03 318 aa22■■□□□ 1.11
VPS53-216ENST00000574029 C1orf216Q8TAB5 229 aa22■■□□□ 1.11
VPS53-216ENST00000574029 KCTD13Q8WZ19 329 aa22■■□□□ 1.11
VPS53-216ENST00000574029 PCED1AQ9H1Q7 454 aa22■■□□□ 1.11
VPS53-216ENST00000574029 TMEM245Q9H330 911 aa22■■□□□ 1.11
VPS53-216ENST00000574029 HESX1Q9UBX0 185 aa22■■□□□ 1.11
VPS53-216ENST00000574029 SFMBT1Q9UHJ3 866 aa22■■□□□ 1.11
VPS53-216ENST00000574029 YJEFN3A6XGL0 299 aa21.99■■□□□ 1.11
VPS53-216ENST00000574029 E7ENQ6 273 aa21.99■■□□□ 1.11
VPS53-216ENST00000574029 BCAT2O15382 392 aaPredicted RBP21.99■■□□□ 1.11
VPS53-216ENST00000574029 SLC16A3O15427 465 aaKnown RBP21.99■■□□□ 1.11
VPS53-216ENST00000574029 TSPAN3O60637 253 aa21.99■■□□□ 1.11
VPS53-216ENST00000574029 CBFA2T3O75081 653 aa21.99■■□□□ 1.11
VPS53-216ENST00000574029 LATS1O95835 1130 aa21.99■■□□□ 1.11
VPS53-216ENST00000574029 FTH1P19P0C7X4 201 aa21.99■■□□□ 1.11
VPS53-216ENST00000574029 ZNF883P0CG24 379 aa21.99■■□□□ 1.11
VPS53-216ENST00000574029 PRCPP42785 496 aa21.99■■□□□ 1.11
VPS53-216ENST00000574029 BNC1Q01954 994 aa21.99■■□□□ 1.11
VPS53-216ENST00000574029 COBLL1Q53SF7 1204 aa21.99■■□□□ 1.11
VPS53-216ENST00000574029 DCAF17Q5H9S7 520 aaPredicted RBP21.99■■□□□ 1.11
VPS53-216ENST00000574029 TCERG1LQ5VWI1 586 aa21.99■■□□□ 1.11
VPS53-216ENST00000574029 KIAA0907Q7Z7F0 614 aaPredicted RBP21.99■■□□□ 1.11
VPS53-216ENST00000574029 GLRX5Q86SX6 157 aa21.99■■□□□ 1.11
VPS53-216ENST00000574029 SCML4Q8N228 414 aa21.99■■□□□ 1.11
VPS53-216ENST00000574029 UBR7Q8N806 425 aa21.99■■□□□ 1.11
VPS53-216ENST00000574029 DDX51Q8N8A6 666 aaKnown RBP eCLIP21.99■■□□□ 1.11
VPS53-216ENST00000574029 WFIKKN2Q8TEU8 576 aa21.99■■□□□ 1.11
VPS53-216ENST00000574029 RNF139Q8WU17 664 aa21.99■■□□□ 1.11
VPS53-216ENST00000574029 EDEM1Q92611 657 aa21.99■■□□□ 1.11
VPS53-216ENST00000574029 IPO9Q96P70 1041 aaKnown RBP21.99■■□□□ 1.11
VPS53-216ENST00000574029 ABCC13Q9NSE7 274 aa21.99■■□□□ 1.11
VPS53-216ENST00000574029 EIF2B4Q9UI10 523 aaKnown RBP21.99■■□□□ 1.11
VPS53-216ENST00000574029 ATP6V1DQ9Y5K8 247 aa21.99■■□□□ 1.11
VPS53-216ENST00000574029 WDFY3Q8IZQ1 3526 aa21.98■■□□□ 1.11
VPS53-216ENST00000574029 SPEGQ15772 3267 aa21.98■■□□□ 1.11
VPS53-216ENST00000574029 VDRP11473 427 aa21.98■■□□□ 1.11
VPS53-216ENST00000574029 HLA-EP13747 358 aa21.98■■□□□ 1.11
VPS53-216ENST00000574029 CD19P15391 556 aa21.98■■□□□ 1.11
VPS53-216ENST00000574029 YWHAEP62258 255 aaKnown RBP21.98■■□□□ 1.11
VPS53-216ENST00000574029 PNOCQ13519 176 aa21.98■■□□□ 1.11
VPS53-216ENST00000574029 PKDCCQ504Y2 493 aa21.98■■□□□ 1.11
VPS53-216ENST00000574029 ADGRF1Q5T601 910 aa21.98■■□□□ 1.11
VPS53-216ENST00000574029 IL27RAQ6UWB1 636 aa21.98■■□□□ 1.11
VPS53-216ENST00000574029 ADIPOR2Q86V24 386 aa21.98■■□□□ 1.11
VPS53-216ENST00000574029 CACUL1Q86Y37 369 aa21.98■■□□□ 1.11
VPS53-216ENST00000574029 UBA3Q8TBC4 463 aa21.98■■□□□ 1.11
VPS53-216ENST00000574029 TMA16Q96EY4 203 aaKnown RBP21.98■■□□□ 1.11
VPS53-216ENST00000574029 CCDC34Q96HJ3 373 aa21.98■■□□□ 1.11
VPS53-216ENST00000574029 IL21RQ9HBE5 538 aa21.98■■□□□ 1.11
VPS53-216ENST00000574029 CNGB3Q9NQW8 809 aa21.98■■□□□ 1.11
VPS53-216ENST00000574029 RMND1Q9NWS8 449 aa21.98■■□□□ 1.11
VPS53-216ENST00000574029 PCOLCE2Q9UKZ9 415 aa21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms