RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 SDE2Q6IQ49 451 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 PKN3Q6P5Z2 889 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 GJB7Q6PEY0 223 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.46□□□□□ -1.06
VPS53-214ENST00000572607 WDR5BQ86VZ2 330 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 C12orf40Q86WS4 652 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 TMEM25Q86YD3 366 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 FMNL3Q8IVF7 1028 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 ZNF606Q8WXB4 792 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 NDRG1Q92597 394 aaKnown RBP8.46□□□□□ -1.06
VPS53-214ENST00000572607 EDEM1Q92611 657 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 WBP2Q969T9 261 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 FAM149B1Q96BN6 582 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 HHIPQ96QV1 700 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 ZSWIM1Q9BR11 485 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 LSM14BQ9BX40 385 aaKnown RBP8.46□□□□□ -1.06
VPS53-214ENST00000572607 NAT10Q9H0A0 1025 aaKnown RBP8.46□□□□□ -1.06
VPS53-214ENST00000572607 SAMSN1Q9NSI8 373 aaKnown RBP8.46□□□□□ -1.06
VPS53-214ENST00000572607 GREB1Q4ZG55 1949 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 DENND4CQ5VZ89 1909 aa8.46□□□□□ -1.06
VPS53-214ENST00000572607 ZNF638Q14966 1978 aaKnown RBP8.45□□□□□ -1.06
VPS53-214ENST00000572607 TYW5A2RUC4 315 aaKnown RBP8.45□□□□□ -1.06
VPS53-214ENST00000572607 K7EQS6 105 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 CACNG3O60359 315 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 GREM1O60565 184 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 LATS1O95835 1130 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 CALCAP01258 141 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 LTFP02788 710 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 NCAM1P13591 858 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 CDK11BP21127 795 aaKnown RBP8.45□□□□□ -1.06
VPS53-214ENST00000572607 KRT9P35527 623 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 GPD2P43304 727 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 DGKGP49619 791 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 DGKEP52429 567 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 MYL5Q02045 173 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 DMWDQ09019 674 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 RAPGEF1Q13905 1077 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 E2F5Q15329 346 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 TRIP4Q15650 581 aaPredicted RBP8.45□□□□□ -1.06
VPS53-214ENST00000572607 GAB4Q2WGN9 574 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 NUGGCQ68CJ6 796 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 LAIR1Q6GTX8 287 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 DENND1BQ6P3S1 775 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 RBM43Q6ZSC3 357 aaKnown RBP8.45□□□□□ -1.06
VPS53-214ENST00000572607 DENND1CQ8IV53 801 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 UNC45BQ8IWX7 931 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 ETFBKMTQ8IXQ9 262 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 GPR161Q8N6U8 529 aaKnown RBP8.45□□□□□ -1.06
VPS53-214ENST00000572607 ZNF513Q8N8E2 541 aaPredicted RBP8.45□□□□□ -1.06
VPS53-214ENST00000572607 TERB1Q8NA31 727 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 IPO4Q8TEX9 1081 aaKnown RBP8.45□□□□□ -1.06
VPS53-214ENST00000572607 USP33Q8TEY7 942 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 DDI1Q8WTU0 396 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 STK32AQ8WU08 396 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 SHC3Q92529 594 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 EZH1Q92800 747 aaPredicted RBP8.45□□□□□ -1.06
VPS53-214ENST00000572607 PCMTD1Q96MG8 357 aaPredicted RBP8.45□□□□□ -1.06
VPS53-214ENST00000572607 SERPINB11Q96P15 392 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 SYNCQ9H7C4 482 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 POLMQ9NP87 494 aaPredicted RBP8.45□□□□□ -1.06
VPS53-214ENST00000572607 PARD6AQ9NPB6 346 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 TAB2Q9NYJ8 693 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 SFMBT1Q9UHJ3 866 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 AGO1Q9UL18 857 aaKnown RBP8.45□□□□□ -1.06
VPS53-214ENST00000572607 MMP17Q9ULZ9 603 aa8.45□□□□□ -1.06
VPS53-214ENST00000572607 HELZP42694 1942 aaKnown RBP8.44□□□□□ -1.06
VPS53-214ENST00000572607 ANAPC1Q9H1A4 1944 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 RALGAPA1Q6GYQ0 2036 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 A0A0A0MRY4 1105 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 BECN2A8MW95 431 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 TERTO14746 1132 aaKnown RBP8.44□□□□□ -1.06
VPS53-214ENST00000572607 RPP40O75818 363 aaKnown RBP8.44□□□□□ -1.06
VPS53-214ENST00000572607 KLF8O95600 359 aaPredicted RBP8.44□□□□□ -1.06
VPS53-214ENST00000572607 CLCN1P35523 988 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 PXNP49023 591 aaPredicted RBP8.44□□□□□ -1.06
VPS53-214ENST00000572607 SLC11A2P49281 568 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 TBX4P57082 545 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 APBA1Q02410 837 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 GUCA2AQ02747 115 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 PDCLQ13371 301 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 LPAL2Q16609 132 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 MPPE1Q53F39 396 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 MIIPQ5JXC2 388 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 ANO7Q6IWH7 933 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 MSANTD2Q6P1R3 559 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 BHLHA9Q7RTU4 235 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 CACNA2D4Q7Z3S7 1137 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 C11orf74Q86VG3 221 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 PASD1Q8IV76 773 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 CCDC117Q8IWD4 279 aaPredicted RBP8.44□□□□□ -1.06
VPS53-214ENST00000572607 PGBD3Q8N328 593 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 CPXM2Q8N436 756 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 CCDC33Q8N5R6 958 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 ALLCQ8N6M5 410 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 TXNDC5Q8NBS9 432 aaKnown RBP8.44□□□□□ -1.06
VPS53-214ENST00000572607 MSANTD4Q8NCY6 345 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 CLEC4CQ8WTT0 213 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 UCMAQ8WVF2 138 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 GAB3Q8WWW8 586 aa8.44□□□□□ -1.06
VPS53-214ENST00000572607 BHMTQ93088 406 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms