RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 PLXNA2O75051 1894 aa7.34□□□□□ -1.23
CHD3-213ENST00000571249 SHANK1Q9Y566 2161 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 COL27A1Q8IZC6 1860 aaPredicted RBP7.33□□□□□ -1.24
CHD3-213ENST00000571249 A0A1W2PR77 199 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 ZNF840PA6NDX5 716 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 FFAR2O15552 330 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 SGSM2O43147 1006 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 ITGA2BP08514 1039 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 MBL2P11226 248 aaPredicted RBP7.33□□□□□ -1.24
CHD3-213ENST00000571249 CKMT1AP12532 417 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 HGFP14210 728 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 GCFC2P16383 781 aaKnown RBP7.33□□□□□ -1.24
CHD3-213ENST00000571249 PAX3P23760 479 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 NXPH1P58417 271 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 TSPY1Q01534 308 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 KLRB1Q12918 225 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 RABEP1Q15276 862 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 ECM1Q16610 540 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 NFE2Q16621 373 aaPredicted RBP7.33□□□□□ -1.24
CHD3-213ENST00000571249 C9orf57Q5W0N0 161 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 TIPARPQ7Z3E1 657 aaKnown RBP7.33□□□□□ -1.24
CHD3-213ENST00000571249 NEK8Q86SG6 692 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 DDX42Q86XP3 938 aaKnown RBP eCLIP7.33□□□□□ -1.24
CHD3-213ENST00000571249 XYLT1Q86Y38 959 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 BBS7Q8IWZ6 715 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 SLFN12Q8IYM2 578 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 ADGRF2Q8IZF7 708 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 SLC34A3Q8N130 599 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 ARMC2Q8NEN0 867 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 WDR36Q8NI36 951 aaKnown RBP7.33□□□□□ -1.24
CHD3-213ENST00000571249 SKA1Q96BD8 255 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 OTUB2Q96DC9 234 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 ESYT1Q9BSJ8 1104 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 SH3GLB2Q9NR46 395 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 AASDHPPTQ9NRN7 309 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 KIAA1468Q9P260 1216 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 LRWD1Q9UFC0 647 aa7.33□□□□□ -1.24
CHD3-213ENST00000571249 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.33□□□□□ -1.24
CHD3-213ENST00000571249 DNMT3AQ9Y6K1 912 aaPredicted RBP7.33□□□□□ -1.24
CHD3-213ENST00000571249 PKDREJQ9NTG1 2253 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 DIDO1Q9BTC0 2240 aaKnown RBP7.32□□□□□ -1.24
CHD3-213ENST00000571249 RP1P56715 2156 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 A0A1W2PPC4 97 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 TTC26A0AVF1 554 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 ARHGEF35A5YM69 484 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 FAM47DPA6NHR8 397 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 CCDC169A6NNP5 214 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 LACTBL1A8MY62 500 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 NEDD8-MDP1E9PL57 170 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 TLR4O00206 839 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 AGRPO00253 132 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 PIRO00625 290 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 XPOTO43592 962 aaKnown RBP7.32□□□□□ -1.24
CHD3-213ENST00000571249 OLFM2O95897 454 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 CISD3P0C7P0 127 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 GIMD1P0DJR0 217 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 CD38P28907 300 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 RCAN1P53805 252 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 ANAPC15P60006 121 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 EXOSC10Q01780 885 aaKnown RBP7.32□□□□□ -1.24
CHD3-213ENST00000571249 PPP2R3AQ06190 1150 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 GNL2Q13823 731 aaKnown RBP7.32□□□□□ -1.24
CHD3-213ENST00000571249 PDIA5Q14554 519 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 CCDC142Q17RM4 750 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 KMT5BQ4FZB7 885 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 SPATA1Q5VX52 437 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 CREB3L3Q68CJ9 461 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 SP5Q6BEB4 398 aaPredicted RBP7.32□□□□□ -1.24
CHD3-213ENST00000571249 NT5DC4Q86YG4 428 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 ZNF276Q8N554 614 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 JPH3Q8WXH2 748 aaPredicted RBP7.32□□□□□ -1.24
CHD3-213ENST00000571249 XPO6Q96QU8 1125 aaKnown RBP7.32□□□□□ -1.24
CHD3-213ENST00000571249 BTBD1Q9H0C5 482 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 ABCB6Q9NP58 842 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 SH3BP1Q9Y3L3 701 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 DAAM1Q9Y4D1 1078 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 PCDHGA7Q9Y5G6 932 aa7.32□□□□□ -1.24
CHD3-213ENST00000571249 MN1Q10571 1320 aaPredicted RBP7.31□□□□□ -1.24
CHD3-213ENST00000571249 TLDC2A0PJX2 215 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 TTLL8A6PVC2 850 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 F12P00748 615 aaPredicted RBP7.31□□□□□ -1.24
CHD3-213ENST00000571249 OAS1P00973 400 aaKnown RBP7.31□□□□□ -1.24
CHD3-213ENST00000571249 CLTAP09496 248 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 SPATA31C1P0DKV0 1188 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 LIPCP11150 499 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 DRD2P14416 443 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 TYRP14679 529 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 PRKCHP24723 683 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 ACAT1P24752 427 aaKnown RBP7.31□□□□□ -1.24
CHD3-213ENST00000571249 DDIT3P35638 169 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 DGKGP49619 791 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 ZNF132P52740 706 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 PDX1P52945 283 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 PEX3P56589 373 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 RAD51AP2Q09MP3 1159 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 KCNJ12Q14500 433 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 NOLC1Q14978 699 aaKnown RBP eCLIP7.31□□□□□ -1.24
CHD3-213ENST00000571249 NPY5RQ15761 445 aa7.31□□□□□ -1.24
CHD3-213ENST00000571249 LACTB2Q53H82 288 aaPredicted RBP7.31□□□□□ -1.24
CHD3-213ENST00000571249 IFI44Q8TCB0 444 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms