RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 PHACTR2O75167 634 aa11.63□□□□□ -0.55
VPS53-207ENST00000570510 MT-CO3P00414 261 aa11.63□□□□□ -0.55
VPS53-207ENST00000570510 MPOP05164 745 aa11.63□□□□□ -0.55
VPS53-207ENST00000570510 KRT10P13645 584 aa11.63□□□□□ -0.55
VPS53-207ENST00000570510 IDEP14735 1019 aa11.63□□□□□ -0.55
VPS53-207ENST00000570510 GABREP78334 506 aa11.63□□□□□ -0.55
VPS53-207ENST00000570510 DAB2P98082 770 aa11.63□□□□□ -0.55
VPS53-207ENST00000570510 CAMK2GQ13555 558 aaPredicted RBP11.63□□□□□ -0.55
VPS53-207ENST00000570510 ALCAMQ13740 583 aa11.63□□□□□ -0.55
VPS53-207ENST00000570510 KIAA0895LQ68EN5 471 aa11.63□□□□□ -0.55
VPS53-207ENST00000570510 WDR49Q8IV35 697 aa11.63□□□□□ -0.55
VPS53-207ENST00000570510 CACTIN-AS1Q8N1I8 211 aa11.63□□□□□ -0.55
VPS53-207ENST00000570510 DCBLD1Q8N8Z6 715 aa11.63□□□□□ -0.55
VPS53-207ENST00000570510 GOLGA1Q92805 767 aa11.63□□□□□ -0.55
VPS53-207ENST00000570510 SLC6A18Q96N87 628 aa11.63□□□□□ -0.55
VPS53-207ENST00000570510 DCLK3Q9C098 648 aa11.63□□□□□ -0.55
VPS53-207ENST00000570510 CYLDQ9NQC7 956 aa11.63□□□□□ -0.55
VPS53-207ENST00000570510 THSD1Q9NS62 852 aa11.63□□□□□ -0.55
VPS53-207ENST00000570510 IL37Q9NZH6 218 aa11.63□□□□□ -0.55
VPS53-207ENST00000570510 NUDT5Q9UKK9 219 aa11.63□□□□□ -0.55
VPS53-207ENST00000570510 PIEZO2Q9H5I5 2752 aa11.63□□□□□ -0.55
VPS53-207ENST00000570510 A0A1W2PPC4 97 aa11.62□□□□□ -0.55
VPS53-207ENST00000570510 LRRC72A6NJI9 287 aa11.62□□□□□ -0.55
VPS53-207ENST00000570510 MDM4O15151 490 aa11.62□□□□□ -0.55
VPS53-207ENST00000570510 RNASEH1O60930 286 aaKnown RBP11.62□□□□□ -0.55
VPS53-207ENST00000570510 PENKP01210 267 aaPredicted RBP11.62□□□□□ -0.55
VPS53-207ENST00000570510 HMBSP08397 361 aa11.62□□□□□ -0.55
VPS53-207ENST00000570510 RALAP11233 206 aa11.62□□□□□ -0.55
VPS53-207ENST00000570510 RARGP13631 454 aa11.62□□□□□ -0.55
VPS53-207ENST00000570510 EPHA8P29322 1005 aaPredicted RBP11.62□□□□□ -0.55
VPS53-207ENST00000570510 MAP3K7CLP57077 242 aa11.62□□□□□ -0.55
VPS53-207ENST00000570510 ERVPABLB-1P60509 514 aa11.62□□□□□ -0.55
VPS53-207ENST00000570510 COG7P83436 770 aa11.62□□□□□ -0.55
VPS53-207ENST00000570510 INSM1Q01101 510 aaPredicted RBP11.62□□□□□ -0.55
VPS53-207ENST00000570510 GRIN1Q05586 938 aa11.62□□□□□ -0.55
VPS53-207ENST00000570510 SGO2Q562F6 1265 aa11.62□□□□□ -0.55
VPS53-207ENST00000570510 COLEC12Q5KU26 742 aa11.62□□□□□ -0.55
VPS53-207ENST00000570510 FYB2Q5VWT5 728 aa11.62□□□□□ -0.55
VPS53-207ENST00000570510 STXBP4Q6ZWJ1 553 aa11.62□□□□□ -0.55
VPS53-207ENST00000570510 HSCBQ8IWL3 235 aa11.62□□□□□ -0.55
VPS53-207ENST00000570510 OXR1Q8N573 874 aa11.62□□□□□ -0.55
VPS53-207ENST00000570510 ZNF366Q8N895 744 aa11.62□□□□□ -0.55
VPS53-207ENST00000570510 TSC1Q92574 1164 aa11.62□□□□□ -0.55
VPS53-207ENST00000570510 TTC9Q92623 222 aa11.62□□□□□ -0.55
VPS53-207ENST00000570510 JAKMIP2Q96AA8 810 aa11.62□□□□□ -0.55
VPS53-207ENST00000570510 DEPDC7Q96QD5 511 aa11.62□□□□□ -0.55
VPS53-207ENST00000570510 ARHGAP9Q9BRR9 750 aa11.62□□□□□ -0.55
VPS53-207ENST00000570510 SLC2A11Q9BYW1 496 aa11.62□□□□□ -0.55
VPS53-207ENST00000570510 ABCG4Q9H172 646 aa11.62□□□□□ -0.55
VPS53-207ENST00000570510 KIAA1586Q9HCI6 787 aa11.62□□□□□ -0.55
VPS53-207ENST00000570510 NAGPAQ9UK23 515 aa11.62□□□□□ -0.55
VPS53-207ENST00000570510 FAM92AA1XBS5 289 aa11.61□□□□□ -0.55
VPS53-207ENST00000570510 CYP26A1O43174 497 aa11.61□□□□□ -0.55
VPS53-207ENST00000570510 USP12O75317 370 aa11.61□□□□□ -0.55
VPS53-207ENST00000570510 PPP1R37O75864 691 aa11.61□□□□□ -0.55
VPS53-207ENST00000570510 STC2O76061 302 aa11.61□□□□□ -0.55
VPS53-207ENST00000570510 CST3P01034 146 aaPredicted RBP11.61□□□□□ -0.55
VPS53-207ENST00000570510 RBMS1P29558 406 aaKnown RBP11.61□□□□□ -0.55
VPS53-207ENST00000570510 LONP1P36776 959 aaKnown RBP11.61□□□□□ -0.55
VPS53-207ENST00000570510 RPS14P62263 151 aaKnown RBP11.61□□□□□ -0.55
VPS53-207ENST00000570510 BNIP3Q12983 259 aa11.61□□□□□ -0.55
VPS53-207ENST00000570510 KIAA1614Q5VZ46 1190 aa11.61□□□□□ -0.55
VPS53-207ENST00000570510 ZNF776Q68DI1 518 aaPredicted RBP11.61□□□□□ -0.55
VPS53-207ENST00000570510 KLHDC10Q6PID8 442 aa11.61□□□□□ -0.55
VPS53-207ENST00000570510 CCDC81Q6ZN84 652 aa11.61□□□□□ -0.55
VPS53-207ENST00000570510 Q6ZNB5 142 aa11.61□□□□□ -0.55
VPS53-207ENST00000570510 ATG14Q6ZNE5 492 aa11.61□□□□□ -0.55
VPS53-207ENST00000570510 SV2BQ7L1I2 683 aa11.61□□□□□ -0.55
VPS53-207ENST00000570510 CBWD2Q8IUF1 395 aa11.61□□□□□ -0.55
VPS53-207ENST00000570510 RDH13Q8NBN7 331 aa11.61□□□□□ -0.55
VPS53-207ENST00000570510 CYB5D2Q8WUJ1 264 aa11.61□□□□□ -0.55
VPS53-207ENST00000570510 RFFLQ8WZ73 363 aa11.61□□□□□ -0.55
VPS53-207ENST00000570510 SYAP1Q96A49 352 aaPredicted RBP11.61□□□□□ -0.55
VPS53-207ENST00000570510 CCDC127Q96BQ5 260 aa11.61□□□□□ -0.55
VPS53-207ENST00000570510 CCDC97Q96F63 343 aaPredicted RBP11.61□□□□□ -0.55
VPS53-207ENST00000570510 PIWIL1Q96J94 861 aaKnown RBP11.61□□□□□ -0.55
VPS53-207ENST00000570510 HIC2Q96JB3 615 aa11.61□□□□□ -0.55
VPS53-207ENST00000570510 SERAC1Q96JX3 654 aa11.61□□□□□ -0.55
VPS53-207ENST00000570510 CDK5RAP1Q96SZ6 601 aaKnown RBP11.61□□□□□ -0.55
VPS53-207ENST00000570510 OMDQ99983 421 aa11.61□□□□□ -0.55
VPS53-207ENST00000570510 CCDC39Q9UFE4 941 aa11.61□□□□□ -0.55
VPS53-207ENST00000570510 SEPT3Q9UH03 358 aa11.61□□□□□ -0.55
VPS53-207ENST00000570510 SUN2Q9UH99 717 aa11.61□□□□□ -0.55
VPS53-207ENST00000570510 NME7Q9Y5B8 376 aa11.61□□□□□ -0.55
VPS53-207ENST00000570510 PCDHB1Q9Y5F3 818 aa11.61□□□□□ -0.55
VPS53-207ENST00000570510 TMEM131Q92545 1883 aa11.61□□□□□ -0.55
VPS53-207ENST00000570510 A0A1W2PQH9 124 aa11.6□□□□□ -0.55
VPS53-207ENST00000570510 TLR4O00206 839 aa11.6□□□□□ -0.55
VPS53-207ENST00000570510 IGHV4-34P06331 123 aa11.6□□□□□ -0.55
VPS53-207ENST00000570510 ATP5BP06576 529 aaKnown RBP11.6□□□□□ -0.55
VPS53-207ENST00000570510 CORO1AP31146 461 aaKnown RBP11.6□□□□□ -0.55
VPS53-207ENST00000570510 ATICP31939 592 aa11.6□□□□□ -0.55
VPS53-207ENST00000570510 PGFP49763 221 aa11.6□□□□□ -0.55
VPS53-207ENST00000570510 ATL3Q6DD88 541 aa11.6□□□□□ -0.55
VPS53-207ENST00000570510 NCEH1Q6PIU2 408 aa11.6□□□□□ -0.55
VPS53-207ENST00000570510 ZNF574Q6ZN55 896 aaPredicted RBP11.6□□□□□ -0.55
VPS53-207ENST00000570510 RSRC2Q7L4I2 434 aaKnown RBP11.6□□□□□ -0.55
VPS53-207ENST00000570510 ACOT1Q86TX2 421 aa11.6□□□□□ -0.55
VPS53-207ENST00000570510 DENND1CQ8IV53 801 aa11.6□□□□□ -0.55
VPS53-207ENST00000570510 SLC2A14Q8TDB8 520 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms