RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 TLR5O60602 858 aa14.54□□□□□ -0.08
CLN3-235ENST00000568497 ZDHHC11BP0C7U3 371 aa14.54□□□□□ -0.08
CLN3-235ENST00000568497 PTGER3P43115 390 aa14.54□□□□□ -0.08
CLN3-235ENST00000568497 MTF1Q14872 753 aa14.54□□□□□ -0.08
CLN3-235ENST00000568497 TAF5Q15542 800 aa14.54□□□□□ -0.08
CLN3-235ENST00000568497 HECTD3Q5T447 861 aa14.54□□□□□ -0.08
CLN3-235ENST00000568497 NOP9Q86U38 636 aaKnown RBP14.54□□□□□ -0.08
CLN3-235ENST00000568497 DNAAF5Q86Y56 855 aa14.54□□□□□ -0.08
CLN3-235ENST00000568497 MIB1Q86YT6 1006 aa14.54□□□□□ -0.08
CLN3-235ENST00000568497 TMEFF1Q8IYR6 380 aa14.54□□□□□ -0.08
CLN3-235ENST00000568497 TTC39CQ8N584 583 aa14.54□□□□□ -0.08
CLN3-235ENST00000568497 PNPLA1Q8N8W4 532 aa14.54□□□□□ -0.08
CLN3-235ENST00000568497 C1orf131Q8NDD1 294 aaKnown RBP14.54□□□□□ -0.08
CLN3-235ENST00000568497 SLC35F5Q8WV83 523 aa14.54□□□□□ -0.08
CLN3-235ENST00000568497 CD101Q93033 1021 aa14.54□□□□□ -0.08
CLN3-235ENST00000568497 SCUBE2Q9NQ36 999 aa14.54□□□□□ -0.08
CLN3-235ENST00000568497 TMEM74BQ9NUR3 256 aa14.54□□□□□ -0.08
CLN3-235ENST00000568497 CACNA2D2Q9NY47 1150 aa14.54□□□□□ -0.08
CLN3-235ENST00000568497 RASAL2Q9UJF2 1139 aa14.54□□□□□ -0.08
CLN3-235ENST00000568497 PCDHB9Q9Y5E1 797 aa14.54□□□□□ -0.08
CLN3-235ENST00000568497 HELZP42694 1942 aaKnown RBP14.54□□□□□ -0.08
CLN3-235ENST00000568497 GON4LQ3T8J9 2241 aa14.54□□□□□ -0.08
CLN3-235ENST00000568497 KIAA1549LQ6ZVL6 1849 aa14.53□□□□□ -0.08
CLN3-235ENST00000568497 FAM92AA1XBS5 289 aa14.53□□□□□ -0.08
CLN3-235ENST00000568497 F8VZ95 297 aa14.53□□□□□ -0.08
CLN3-235ENST00000568497 MMEP08473 750 aa14.53□□□□□ -0.08
CLN3-235ENST00000568497 TRIM21P19474 475 aaKnown RBP14.53□□□□□ -0.08
CLN3-235ENST00000568497 GJA4P35212 333 aa14.53□□□□□ -0.08
CLN3-235ENST00000568497 GPD2P43304 727 aa14.53□□□□□ -0.08
CLN3-235ENST00000568497 SEC13P55735 322 aa14.53□□□□□ -0.08
CLN3-235ENST00000568497 FANCCQ00597 558 aa14.53□□□□□ -0.08
CLN3-235ENST00000568497 GFPT1Q06210 699 aaPredicted RBP14.53□□□□□ -0.08
CLN3-235ENST00000568497 EFEMP1Q12805 493 aa14.53□□□□□ -0.08
CLN3-235ENST00000568497 USP4Q13107 963 aa14.53□□□□□ -0.08
CLN3-235ENST00000568497 SKOR2Q2VWA4 1001 aaPredicted RBP14.53□□□□□ -0.08
CLN3-235ENST00000568497 RAB41Q5JT25 222 aa14.53□□□□□ -0.08
CLN3-235ENST00000568497 C10orf120Q5SQS8 335 aa14.53□□□□□ -0.08
CLN3-235ENST00000568497 SLC23A3Q6PIS1 610 aa14.53□□□□□ -0.08
CLN3-235ENST00000568497 RASSF3Q86WH2 238 aa14.53□□□□□ -0.08
CLN3-235ENST00000568497 SFTPA1Q8IWL2 248 aa14.53□□□□□ -0.08
CLN3-235ENST00000568497 SCUBE3Q8IX30 993 aa14.53□□□□□ -0.08
CLN3-235ENST00000568497 FAM71AQ8IYT1 594 aa14.53□□□□□ -0.08
CLN3-235ENST00000568497 CPA6Q8N4T0 437 aa14.53□□□□□ -0.08
CLN3-235ENST00000568497 MDGA1Q8NFP4 955 aa14.53□□□□□ -0.08
CLN3-235ENST00000568497 RLN3Q8WXF3 142 aa14.53□□□□□ -0.08
CLN3-235ENST00000568497 P2RY11Q96G91 374 aa14.53□□□□□ -0.08
CLN3-235ENST00000568497 NACA2Q9H009 215 aa14.53□□□□□ -0.08
CLN3-235ENST00000568497 TSPY26PQ9H489 355 aa14.53□□□□□ -0.08
CLN3-235ENST00000568497 RTN4Q9NQC3 1192 aaKnown RBP14.53□□□□□ -0.08
CLN3-235ENST00000568497 SFMBT1Q9UHJ3 866 aa14.53□□□□□ -0.08
CLN3-235ENST00000568497 USP3Q9Y6I4 520 aa14.53□□□□□ -0.08
CLN3-235ENST00000568497 BPTFQ12830 3046 aa14.53□□□□□ -0.08
CLN3-235ENST00000568497 E5RJQ4 531 aa14.52□□□□□ -0.09
CLN3-235ENST00000568497 MSI1O43347 362 aaKnown RBP14.52□□□□□ -0.09
CLN3-235ENST00000568497 GRAP2O75791 330 aa14.52□□□□□ -0.09
CLN3-235ENST00000568497 ZBED1O96006 694 aa14.52□□□□□ -0.09
CLN3-235ENST00000568497 SERPINC1P01008 464 aa14.52□□□□□ -0.09
CLN3-235ENST00000568497 TPM2P07951 284 aa14.52□□□□□ -0.09
CLN3-235ENST00000568497 FTH1P19P0C7X4 201 aa14.52□□□□□ -0.09
CLN3-235ENST00000568497 CHRNB2P17787 502 aa14.52□□□□□ -0.09
CLN3-235ENST00000568497 PTMSP20962 102 aa14.52□□□□□ -0.09
CLN3-235ENST00000568497 DDX6P26196 483 aaKnown RBP eCLIP14.52□□□□□ -0.09
CLN3-235ENST00000568497 DPP6P42658 865 aa14.52□□□□□ -0.09
CLN3-235ENST00000568497 PLA2G4AP47712 749 aa14.52□□□□□ -0.09
CLN3-235ENST00000568497 YWHAGP61981 247 aaKnown RBP eCLIP14.52□□□□□ -0.09
CLN3-235ENST00000568497 PITX1P78337 314 aaPredicted RBP14.52□□□□□ -0.09
CLN3-235ENST00000568497 HNRNPDQ14103 355 aaKnown RBP14.52□□□□□ -0.09
CLN3-235ENST00000568497 TRIP6Q15654 476 aaKnown RBP14.52□□□□□ -0.09
CLN3-235ENST00000568497 C2orf27AQ580R0 203 aa14.52□□□□□ -0.09
CLN3-235ENST00000568497 LYSMD4Q5XG99 296 aa14.52□□□□□ -0.09
CLN3-235ENST00000568497 E4F1Q66K89 784 aaPredicted RBP14.52□□□□□ -0.09
CLN3-235ENST00000568497 CCNI2Q6ZMN8 369 aaPredicted RBP14.52□□□□□ -0.09
CLN3-235ENST00000568497 ENOSF1Q7L5Y1 443 aa14.52□□□□□ -0.09
CLN3-235ENST00000568497 SIX6OS1Q8N1H7 587 aa14.52□□□□□ -0.09
CLN3-235ENST00000568497 MINDY1Q8N5J2 469 aa14.52□□□□□ -0.09
CLN3-235ENST00000568497 ANKRD20A12PQ8NF67 263 aa14.52□□□□□ -0.09
CLN3-235ENST00000568497 CCDC26Q8TAB7 109 aa14.52□□□□□ -0.09
CLN3-235ENST00000568497 ADAMTS14Q8WXS8 1223 aa14.52□□□□□ -0.09
CLN3-235ENST00000568497 EZH1Q92800 747 aaPredicted RBP14.52□□□□□ -0.09
CLN3-235ENST00000568497 BHMTQ93088 406 aa14.52□□□□□ -0.09
CLN3-235ENST00000568497 CRELD1Q96HD1 420 aa14.52□□□□□ -0.09
CLN3-235ENST00000568497 UBL7Q96S82 380 aaPredicted RBP14.52□□□□□ -0.09
CLN3-235ENST00000568497 FBXO44Q9H4M3 255 aa14.52□□□□□ -0.09
CLN3-235ENST00000568497 TLR8Q9NR97 1041 aaKnown RBP14.52□□□□□ -0.09
CLN3-235ENST00000568497 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.52□□□□□ -0.09
CLN3-235ENST00000568497 DUS2Q9NX74 493 aaKnown RBP14.52□□□□□ -0.09
CLN3-235ENST00000568497 ARHGAP26Q9UNA1 814 aa14.52□□□□□ -0.09
CLN3-235ENST00000568497 URB1O60287 2271 aaKnown RBP14.52□□□□□ -0.09
CLN3-235ENST00000568497 TNRC6BQ9UPQ9 1833 aaKnown RBP14.51□□□□□ -0.09
CLN3-235ENST00000568497 PAPSS1O43252 624 aaPredicted RBP14.51□□□□□ -0.09
CLN3-235ENST00000568497 ALDH1A2O94788 518 aa14.51□□□□□ -0.09
CLN3-235ENST00000568497 GJB6O95452 261 aa14.51□□□□□ -0.09
CLN3-235ENST00000568497 OLFM2O95897 454 aa14.51□□□□□ -0.09
CLN3-235ENST00000568497 ERBB2P04626 1255 aa14.51□□□□□ -0.09
CLN3-235ENST00000568497 SETSIPP0DME0 302 aa14.51□□□□□ -0.09
CLN3-235ENST00000568497 CYP11B1P15538 503 aa14.51□□□□□ -0.09
CLN3-235ENST00000568497 JAM2P57087 298 aa14.51□□□□□ -0.09
CLN3-235ENST00000568497 DAOAP59103 153 aa14.51□□□□□ -0.09
CLN3-235ENST00000568497 SLC7A9P82251 487 aa14.51□□□□□ -0.09
CLN3-235ENST00000568497 GOLGA8FQ08AF8 430 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms