RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 UGDHO60701 494 aa3.35□□□□□ -1.87
VPS35-207ENST00000568191 SGPL1O95470 568 aa3.35□□□□□ -1.87
VPS35-207ENST00000568191 ST6GAL1P15907 406 aa3.35□□□□□ -1.87
VPS35-207ENST00000568191 HOXA7P31268 230 aaPredicted RBP3.35□□□□□ -1.87
VPS35-207ENST00000568191 HTR7P34969 479 aa3.35□□□□□ -1.87
VPS35-207ENST00000568191 PGGT1BP53609 377 aa3.35□□□□□ -1.87
VPS35-207ENST00000568191 IFIT5Q13325 482 aaKnown RBP3.35□□□□□ -1.87
VPS35-207ENST00000568191 ANXA2RQ3ZCQ2 193 aa3.35□□□□□ -1.87
VPS35-207ENST00000568191 EEF1AKMT2Q5JPI9 291 aaKnown RBP3.35□□□□□ -1.87
VPS35-207ENST00000568191 LIPMQ5VYY2 423 aa3.35□□□□□ -1.87
VPS35-207ENST00000568191 ABLIM2Q6H8Q1 611 aa3.35□□□□□ -1.87
VPS35-207ENST00000568191 ZNF549Q6P9A3 640 aa3.35□□□□□ -1.87
VPS35-207ENST00000568191 CRTC1Q6UUV9 634 aa3.35□□□□□ -1.87
VPS35-207ENST00000568191 KRT27Q7Z3Y8 459 aa3.35□□□□□ -1.87
VPS35-207ENST00000568191 TMEM199Q8N511 208 aa3.35□□□□□ -1.87
VPS35-207ENST00000568191 SRFBP1Q8NEF9 429 aaKnown RBP3.35□□□□□ -1.87
VPS35-207ENST00000568191 ZNF845Q96IR2 970 aaPredicted RBP3.35□□□□□ -1.87
VPS35-207ENST00000568191 NUDT22Q9BRQ3 303 aa3.35□□□□□ -1.87
VPS35-207ENST00000568191 TMEM204Q9BSN7 226 aa3.35□□□□□ -1.87
VPS35-207ENST00000568191 APOL5Q9BWW9 433 aa3.35□□□□□ -1.87
VPS35-207ENST00000568191 CDCP1Q9H5V8 836 aa3.35□□□□□ -1.87
VPS35-207ENST00000568191 TASP1Q9H6P5 420 aa3.35□□□□□ -1.87
VPS35-207ENST00000568191 MLXIPQ9HAP2 919 aa3.35□□□□□ -1.87
VPS35-207ENST00000568191 ZNF112Q9UJU3 913 aa3.35□□□□□ -1.87
VPS35-207ENST00000568191 TTC3P53804 2025 aa3.34□□□□□ -1.87
VPS35-207ENST00000568191 POM121BA6NF01 834 aa3.34□□□□□ -1.87
VPS35-207ENST00000568191 F8W8V4 182 aa3.34□□□□□ -1.87
VPS35-207ENST00000568191 NDUFB8O95169 186 aa3.34□□□□□ -1.87
VPS35-207ENST00000568191 NDUFS1P28331 727 aa3.34□□□□□ -1.87
VPS35-207ENST00000568191 CIITAP33076 1130 aa3.34□□□□□ -1.87
VPS35-207ENST00000568191 KRTAP10-9P60411 292 aa3.34□□□□□ -1.87
VPS35-207ENST00000568191 ATP1A4Q13733 1029 aa3.34□□□□□ -1.87
VPS35-207ENST00000568191 ELF2Q15723 593 aa3.34□□□□□ -1.87
VPS35-207ENST00000568191 INPP5JQ15735 1006 aaPredicted RBP3.34□□□□□ -1.87
VPS35-207ENST00000568191 TMEM196Q5HYL7 178 aa3.34□□□□□ -1.87
VPS35-207ENST00000568191 ISM2Q6H9L7 571 aa3.34□□□□□ -1.87
VPS35-207ENST00000568191 CCDC144NLQ6NUI1 221 aa3.34□□□□□ -1.87
VPS35-207ENST00000568191 ACSM6Q6P461 480 aa3.34□□□□□ -1.87
VPS35-207ENST00000568191 DHRS13Q6UX07 377 aa3.34□□□□□ -1.87
VPS35-207ENST00000568191 RFX8Q6ZV50 586 aa3.34□□□□□ -1.87
VPS35-207ENST00000568191 C14orf80Q86SX3 495 aa3.34□□□□□ -1.87
VPS35-207ENST00000568191 ADHFE1Q8IWW8 467 aa3.34□□□□□ -1.87
VPS35-207ENST00000568191 CLASRPQ8N2M8 674 aaKnown RBP3.34□□□□□ -1.87
VPS35-207ENST00000568191 ADPRHL1Q8NDY3 354 aa3.34□□□□□ -1.87
VPS35-207ENST00000568191 LPAR1Q92633 364 aa3.34□□□□□ -1.87
VPS35-207ENST00000568191 PRR11Q96HE9 360 aaPredicted RBP3.34□□□□□ -1.87
VPS35-207ENST00000568191 WDR24Q96S15 920 aa3.34□□□□□ -1.87
VPS35-207ENST00000568191 NTPCRQ9BSD7 190 aaKnown RBP3.34□□□□□ -1.87
VPS35-207ENST00000568191 SF3B5Q9BWJ5 86 aaKnown RBP3.34□□□□□ -1.87
VPS35-207ENST00000568191 COLEC11Q9BWP8 271 aa3.34□□□□□ -1.87
VPS35-207ENST00000568191 MRPL44Q9H9J2 332 aaKnown RBP3.34□□□□□ -1.87
VPS35-207ENST00000568191 PRDM16Q9HAZ2 1276 aa3.34□□□□□ -1.87
VPS35-207ENST00000568191 MOV10Q9HCE1 1003 aaKnown RBP3.34□□□□□ -1.87
VPS35-207ENST00000568191 METTL14Q9HCE5 456 aaKnown RBP3.34□□□□□ -1.87
VPS35-207ENST00000568191 AGO4Q9HCK5 861 aaKnown RBP3.34□□□□□ -1.87
VPS35-207ENST00000568191 TMEM8AQ9HCN3 771 aa3.34□□□□□ -1.87
VPS35-207ENST00000568191 FBXO28Q9NVF7 368 aa3.34□□□□□ -1.87
VPS35-207ENST00000568191 AGO2Q9UKV8 859 aaKnown RBP3.34□□□□□ -1.87
VPS35-207ENST00000568191 COG5Q9UP83 839 aa3.34□□□□□ -1.87
VPS35-207ENST00000568191 CEP83Q9Y592 693 aa3.34□□□□□ -1.87
VPS35-207ENST00000568191 TTBK1Q5TCY1 1321 aaPredicted RBP3.34□□□□□ -1.87
VPS35-207ENST00000568191 CCDC187A0A096LP49 1063 aa3.33□□□□□ -1.88
VPS35-207ENST00000568191 KIR2DS5A0A0G2JLQ3 304 aa3.33□□□□□ -1.88
VPS35-207ENST00000568191 EME2A4GXA9 379 aaPredicted RBP3.33□□□□□ -1.88
VPS35-207ENST00000568191 KIR2DS3K7RE56 304 aa3.33□□□□□ -1.88
VPS35-207ENST00000568191 KCNQ3O43525 872 aa3.33□□□□□ -1.88
VPS35-207ENST00000568191 TLX3O43711 291 aaPredicted RBP3.33□□□□□ -1.88
VPS35-207ENST00000568191 TOMM40O96008 361 aa3.33□□□□□ -1.88
VPS35-207ENST00000568191 MBPP02686 304 aaPredicted RBP3.33□□□□□ -1.88
VPS35-207ENST00000568191 SRGAP2BP0DMP2 458 aa3.33□□□□□ -1.88
VPS35-207ENST00000568191 FGFR2P21802 821 aa3.33□□□□□ -1.88
VPS35-207ENST00000568191 HTR6P50406 440 aa3.33□□□□□ -1.88
VPS35-207ENST00000568191 ERV3-1Q14264 604 aa3.33□□□□□ -1.88
VPS35-207ENST00000568191 CSHL1Q14406 222 aa3.33□□□□□ -1.88
VPS35-207ENST00000568191 PTGR1Q14914 329 aa3.33□□□□□ -1.88
VPS35-207ENST00000568191 FAM90A2PQ658T7 463 aa3.33□□□□□ -1.88
VPS35-207ENST00000568191 LRIG3Q6UXM1 1119 aa3.33□□□□□ -1.88
VPS35-207ENST00000568191 MEPCEQ7L2J0 689 aaKnown RBP3.33□□□□□ -1.88
VPS35-207ENST00000568191 ARHGAP30Q7Z6I6 1101 aaPredicted RBP3.33□□□□□ -1.88
VPS35-207ENST00000568191 TFAP2DQ7Z6R9 452 aa3.33□□□□□ -1.88
VPS35-207ENST00000568191 C11orf96Q7Z7L8 435 aa3.33□□□□□ -1.88
VPS35-207ENST00000568191 DGKHQ86XP1 1220 aa3.33□□□□□ -1.88
VPS35-207ENST00000568191 CCDC28AQ8IWP9 274 aa3.33□□□□□ -1.88
VPS35-207ENST00000568191 TXLNBQ8N3L3 684 aa3.33□□□□□ -1.88
VPS35-207ENST00000568191 GLMPQ8WWB7 406 aa3.33□□□□□ -1.88
VPS35-207ENST00000568191 ASB12Q8WXK4 309 aa3.33□□□□□ -1.88
VPS35-207ENST00000568191 GJA10Q969M2 543 aa3.33□□□□□ -1.88
VPS35-207ENST00000568191 FAR2Q96K12 515 aa3.33□□□□□ -1.88
VPS35-207ENST00000568191 ZPBPQ9BS86 351 aa3.33□□□□□ -1.88
VPS35-207ENST00000568191 PCGF6Q9BYE7 350 aa3.33□□□□□ -1.88
VPS35-207ENST00000568191 PCDHAC1Q9H158 963 aa3.33□□□□□ -1.88
VPS35-207ENST00000568191 HIF1ANQ9NWT6 349 aa3.33□□□□□ -1.88
VPS35-207ENST00000568191 MYO1AQ9UBC5 1043 aa3.33□□□□□ -1.88
VPS35-207ENST00000568191 ZMYND8Q9ULU4 1186 aaPredicted RBP3.33□□□□□ -1.88
VPS35-207ENST00000568191 UBE2J1Q9Y385 318 aaPredicted RBP3.33□□□□□ -1.88
VPS35-207ENST00000568191 TRBV5-3A0A0A0MS03 114 aa3.32□□□□□ -1.88
VPS35-207ENST00000568191 TMEM272A0A1B0GTI8 110 aa3.32□□□□□ -1.88
VPS35-207ENST00000568191 PRYO14603 147 aa3.32□□□□□ -1.88
VPS35-207ENST00000568191 APOL1O14791 398 aa3.32□□□□□ -1.88
VPS35-207ENST00000568191 SMAD6O43541 496 aaKnown RBP3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms