RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 DHDDSQ86SQ9 333 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 C10orf107Q8IVU9 208 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 OR6Y1Q8NGX8 325 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 AGR3Q8TD06 166 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 ATXN7L3BQ96GX2 97 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 CPB2Q96IY4 423 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 LPIN3Q9BQK8 851 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 FRMD8Q9BZ67 464 aaPredicted RBP13.62□□□□□ -0.23
CLN3-210ENST00000563874 NRDE2Q9H7Z3 1164 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 ZNF358Q9NW07 568 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 PCDHA11Q9Y5I1 949 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 OPHN1O60890 802 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 STK10O94804 968 aaKnown RBP13.62□□□□□ -0.23
CLN3-210ENST00000563874 PFKMP08237 780 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 SERPINB6P35237 376 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 COPAP53621 1224 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 PDK2Q15119 407 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 RABGAP1LQ5R372 815 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 TMCO4Q5TGY1 634 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 HPS6Q86YV9 775 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 MICALL2Q8IY33 904 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 MAN1C1Q9NR34 630 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 MKS1Q9NXB0 559 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 MGAMO43451 1857 aa13.62□□□□□ -0.23
CLN3-210ENST00000563874 SOWAHBA6NEL2 793 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 NOP56O00567 594 aaKnown RBP13.61□□□□□ -0.23
CLN3-210ENST00000563874 MAGEA3P43357 314 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 AQP4P55087 323 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 CCNIQ14094 377 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 CNPY1Q3B7I2 92 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 MTHFD1LQ6UB35 978 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 KYAT3Q6YP21 454 aaKnown RBP13.61□□□□□ -0.23
CLN3-210ENST00000563874 ARCQ7LC44 396 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 DNERQ8NFT8 737 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 C1orf21Q9H246 121 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 FZD8Q9H461 694 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 RLFQ13129 1914 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 TXNDC9O14530 226 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 ADCY6O43306 1168 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 HDAC4P56524 1084 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 PCLAFQ15004 111 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 TBCCQ15814 346 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 PPP1R26Q5T8A7 1209 aaPredicted RBP13.61□□□□□ -0.23
CLN3-210ENST00000563874 DEFB107AQ8IZN7 70 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 PHTF2Q8N3S3 785 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 MCUQ8NE86 351 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 CXorf38Q8TB03 319 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 CLEC4CQ8WTT0 213 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 PPP2R3CQ969Q6 453 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 LRRC39Q96DD0 335 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 OXCT2Q9BYC2 517 aaPredicted RBP13.61□□□□□ -0.23
CLN3-210ENST00000563874 C2orf40Q9H1Z8 148 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 RNPEPQ9H4A4 650 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 GBA2Q9HCG7 927 aaPredicted RBP13.61□□□□□ -0.23
CLN3-210ENST00000563874 GPAMQ9HCL2 828 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 XPNPEP3Q9NQH7 507 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 HOXC10Q9NYD6 342 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 GJA3Q9Y6H8 435 aa13.61□□□□□ -0.23
CLN3-210ENST00000563874 KLHL33A6NCF5 533 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 FKBP6O75344 327 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 IDH3AP50213 366 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 MBTD1Q05BQ5 628 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 DLG1Q12959 904 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 EFCAB12Q6NXP0 572 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 OLFML1Q6UWY5 402 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 METTL7BQ6UX53 244 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 ANKRD23Q86SG2 305 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 ACOT1Q86TX2 421 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 NCAPG2Q86XI2 1143 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 TNS4Q8IZW8 715 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 ZFAND2BQ8WV99 257 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 LGMNQ99538 433 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 ACSS2Q9NR19 701 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 ETAA1Q9NY74 926 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 MOCS1Q9NZB8 636 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 BARX2Q9UMQ3 279 aaPredicted RBP13.6□□□□□ -0.23
CLN3-210ENST00000563874 PHIPQ8WWQ0 1821 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 PARP14Q460N5 1801 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 DCXO43602 365 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 PLIN3O60664 434 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 CD1EP15812 388 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 MAGEA6P43360 314 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 SERPINB9P50453 376 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 GTF2A2P52657 109 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 CUL3Q13618 768 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 TRIP10Q15642 601 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 DCAF15Q66K64 600 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 PDSS2Q86YH6 399 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 CDKL3Q8IVW4 592 aaPredicted RBP13.6□□□□□ -0.23
CLN3-210ENST00000563874 RAB3IL1Q8TBN0 382 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 GDPD5Q8WTR4 605 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 KHSRPQ92945 711 aaKnown RBP eCLIP13.6□□□□□ -0.23
CLN3-210ENST00000563874 TMEM216Q9P0N5 145 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 CDH22Q9UJ99 828 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 RTN3O95197 1032 aaPredicted RBP13.6□□□□□ -0.23
CLN3-210ENST00000563874 IL18RAPO95256 599 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 MGAT1P26572 445 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 USP4Q13107 963 aa13.6□□□□□ -0.23
CLN3-210ENST00000563874 MSLNQ13421 630 aaPredicted RBP13.6□□□□□ -0.23
CLN3-210ENST00000563874 OLIG2Q13516 323 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms