RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 FUT11Q495W5 492 aa17.97■□□□□ 0.47
VPS9D1-203ENST00000563798 ADGRF1Q5T601 910 aa17.97■□□□□ 0.47
VPS9D1-203ENST00000563798 PSAPL1Q6NUJ1 521 aa17.97■□□□□ 0.47
VPS9D1-203ENST00000563798 KIAA0907Q7Z7F0 614 aaPredicted RBP17.97■□□□□ 0.47
VPS9D1-203ENST00000563798 SLC41A1Q8IVJ1 513 aa17.97■□□□□ 0.47
VPS9D1-203ENST00000563798 DDX51Q8N8A6 666 aaKnown RBP eCLIP17.97■□□□□ 0.47
VPS9D1-203ENST00000563798 EDEM1Q92611 657 aa17.97■□□□□ 0.47
VPS9D1-203ENST00000563798 KAT5Q92993 513 aa17.97■□□□□ 0.47
VPS9D1-203ENST00000563798 ITM2CQ9NQX7 267 aa17.97■□□□□ 0.47
VPS9D1-203ENST00000563798 USP36Q9P275 1121 aaKnown RBP17.97■□□□□ 0.47
VPS9D1-203ENST00000563798 SFMBT1Q9UHJ3 866 aa17.97■□□□□ 0.47
VPS9D1-203ENST00000563798 CYP8B1Q9UNU6 501 aa17.97■□□□□ 0.47
VPS9D1-203ENST00000563798 KMT2BQ9UMN6 2715 aaPredicted RBP17.97■□□□□ 0.47
VPS9D1-203ENST00000563798 IGLV3-19P01714 112 aa17.96■□□□□ 0.47
VPS9D1-203ENST00000563798 RING1Q06587 406 aa17.96■□□□□ 0.47
VPS9D1-203ENST00000563798 KCNH2Q12809 1159 aa17.96■□□□□ 0.47
VPS9D1-203ENST00000563798 ZNF234Q14588 700 aa17.96■□□□□ 0.47
VPS9D1-203ENST00000563798 MEA1Q16626 185 aa17.96■□□□□ 0.47
VPS9D1-203ENST00000563798 MPP7Q5T2T1 576 aa17.96■□□□□ 0.47
VPS9D1-203ENST00000563798 TMEM215Q68D42 235 aa17.96■□□□□ 0.47
VPS9D1-203ENST00000563798 KLHL10Q6JEL2 608 aa17.96■□□□□ 0.47
VPS9D1-203ENST00000563798 AZIN2Q96A70 460 aa17.96■□□□□ 0.47
VPS9D1-203ENST00000563798 MKRN2Q9H000 416 aaKnown RBP17.96■□□□□ 0.47
VPS9D1-203ENST00000563798 NFE2L3Q9Y4A8 694 aa17.96■□□□□ 0.47
VPS9D1-203ENST00000563798 FBXO21O94952 628 aa17.95■□□□□ 0.46
VPS9D1-203ENST00000563798 NCAM1P13591 858 aa17.95■□□□□ 0.46
VPS9D1-203ENST00000563798 LCP1P13796 627 aa17.95■□□□□ 0.46
VPS9D1-203ENST00000563798 KCNA4P22459 653 aa17.95■□□□□ 0.46
VPS9D1-203ENST00000563798 BRD2P25440 801 aaKnown RBP17.95■□□□□ 0.46
VPS9D1-203ENST00000563798 PAK1Q13153 545 aa17.95■□□□□ 0.46
VPS9D1-203ENST00000563798 SH3PXD2AQ5TCZ1 1133 aa17.95■□□□□ 0.46
VPS9D1-203ENST00000563798 SMYD5Q6GMV2 418 aa17.95■□□□□ 0.46
VPS9D1-203ENST00000563798 ARHGEF19Q8IW93 802 aa17.95■□□□□ 0.46
VPS9D1-203ENST00000563798 TRIML1Q8N9V2 468 aa17.95■□□□□ 0.46
VPS9D1-203ENST00000563798 WFIKKN2Q8TEU8 576 aa17.95■□□□□ 0.46
VPS9D1-203ENST00000563798 FOXJ1Q92949 421 aa17.95■□□□□ 0.46
VPS9D1-203ENST00000563798 TMA16Q96EY4 203 aaKnown RBP17.95■□□□□ 0.46
VPS9D1-203ENST00000563798 KREMEN1Q96MU8 473 aa17.95■□□□□ 0.46
VPS9D1-203ENST00000563798 SLC6A17Q9H1V8 727 aa17.95■□□□□ 0.46
VPS9D1-203ENST00000563798 PRDM16Q9HAZ2 1276 aa17.95■□□□□ 0.46
VPS9D1-203ENST00000563798 WSB2Q9NYS7 404 aaPredicted RBP17.95■□□□□ 0.46
VPS9D1-203ENST00000563798 CHD8Q9HCK8 2581 aa17.95■□□□□ 0.46
VPS9D1-203ENST00000563798 ATXN2Q99700 1313 aaKnown RBP17.95■□□□□ 0.46
VPS9D1-203ENST00000563798 CEP192Q8TEP8 1941 aa17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 PCDH15Q96QU1 1955 aa17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 M0QYV0 167 aa17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 GIPC1O14908 333 aa17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 GADD45BO75293 160 aaPredicted RBP17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 AFPP02771 609 aaKnown RBP17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 LTFP02788 710 aa17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 CD6P30203 668 aa17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 HLA-FP30511 346 aa17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 RGS7P49802 495 aa17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 COPAP53621 1224 aa17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 GFPT1Q06210 699 aaPredicted RBP17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 SEMA3BQ13214 749 aa17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 NUGGCQ68CJ6 796 aa17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 KIAA1324Q6UXG2 1013 aaKnown RBP17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 BEND5Q7L4P6 421 aa17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 RRAGAQ7L523 313 aa17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 PIP4P1Q86T03 277 aa17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 UNC45BQ8IWX7 931 aa17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 DEFB119Q8N690 84 aa17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 CADM4Q8NFZ8 388 aa17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 STK32AQ8WU08 396 aa17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 DNASE2BQ8WZ79 361 aa17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 HSPA12BQ96MM6 686 aa17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 TMEM245Q9H330 911 aa17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 CD93Q9NPY3 652 aa17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 WASF3Q9UPY6 502 aa17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 CTNND2Q9UQB3 1225 aa17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.94■□□□□ 0.46
VPS9D1-203ENST00000563798 GON4LQ3T8J9 2241 aa17.93■□□□□ 0.46
VPS9D1-203ENST00000563798 IRAK2O43187 625 aa17.93■□□□□ 0.46
VPS9D1-203ENST00000563798 MSI1O43347 362 aaKnown RBP17.93■□□□□ 0.46
VPS9D1-203ENST00000563798 SYNCRIPO60506 623 aaKnown RBP17.93■□□□□ 0.46
VPS9D1-203ENST00000563798 NDUFS2O75306 463 aa17.93■□□□□ 0.46
VPS9D1-203ENST00000563798 FYNP06241 537 aa17.93■□□□□ 0.46
VPS9D1-203ENST00000563798 PRKCHP24723 683 aa17.93■□□□□ 0.46
VPS9D1-203ENST00000563798 OXTRP30559 389 aa17.93■□□□□ 0.46
VPS9D1-203ENST00000563798 GPD2P43304 727 aa17.93■□□□□ 0.46
VPS9D1-203ENST00000563798 NNTQ13423 1086 aa17.93■□□□□ 0.46
VPS9D1-203ENST00000563798 CAMK2GQ13555 558 aaPredicted RBP17.93■□□□□ 0.46
VPS9D1-203ENST00000563798 SYCP2LQ5T4T6 812 aa17.93■□□□□ 0.46
VPS9D1-203ENST00000563798 PIK3R6Q5UE93 754 aa17.93■□□□□ 0.46
VPS9D1-203ENST00000563798 ADIPOR2Q86V24 386 aa17.93■□□□□ 0.46
VPS9D1-203ENST00000563798 TMPRSS6Q8IU80 811 aa17.93■□□□□ 0.46
VPS9D1-203ENST00000563798 ZNF557Q8N988 423 aaPredicted RBP17.93■□□□□ 0.46
VPS9D1-203ENST00000563798 SRRTQ9BXP5 876 aaKnown RBP17.93■□□□□ 0.46
VPS9D1-203ENST00000563798 CIPCQ9C0C6 399 aa17.93■□□□□ 0.46
VPS9D1-203ENST00000563798 INTS2Q9H0H0 1204 aaKnown RBP17.93■□□□□ 0.46
VPS9D1-203ENST00000563798 SUSD2Q9UGT4 822 aa17.93■□□□□ 0.46
VPS9D1-203ENST00000563798 PI4KAP42356 2102 aa17.93■□□□□ 0.46
VPS9D1-203ENST00000563798 CKAP5Q14008 2032 aa17.93■□□□□ 0.46
VPS9D1-203ENST00000563798 KCNJ18B7U540 433 aa17.92■□□□□ 0.46
VPS9D1-203ENST00000563798 BIN1O00499 593 aa17.92■□□□□ 0.46
VPS9D1-203ENST00000563798 ARHGAP33O14559 1287 aa17.92■□□□□ 0.46
VPS9D1-203ENST00000563798 SART1O43290 800 aaKnown RBP17.92■□□□□ 0.46
VPS9D1-203ENST00000563798 TSPAN3O60637 253 aa17.92■□□□□ 0.46
VPS9D1-203ENST00000563798 FGFR1OPO95684 399 aaKnown RBP17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms