RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 RNF34Q969K3 372 aa17.22■□□□□ 0.35
VPS4A-202ENST00000562754 MAGEB5Q9BZ81 275 aa17.22■□□□□ 0.35
VPS4A-202ENST00000562754 TKTL2Q9H0I9 626 aa17.22■□□□□ 0.35
VPS4A-202ENST00000562754 WDCPQ9H6R7 721 aa17.22■□□□□ 0.35
VPS4A-202ENST00000562754 TDP1Q9NUW8 608 aa17.22■□□□□ 0.35
VPS4A-202ENST00000562754 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.22■□□□□ 0.35
VPS4A-202ENST00000562754 AMFRQ9UKV5 643 aa17.22■□□□□ 0.35
VPS4A-202ENST00000562754 FZD10Q9ULW2 581 aa17.22■□□□□ 0.35
VPS4A-202ENST00000562754 DDX3YO15523 660 aaKnown RBP17.21■□□□□ 0.35
VPS4A-202ENST00000562754 PSTPIP1O43586 416 aa17.21■□□□□ 0.35
VPS4A-202ENST00000562754 RARAP10276 462 aa17.21■□□□□ 0.35
VPS4A-202ENST00000562754 TCF3P15923 654 aa17.21■□□□□ 0.35
VPS4A-202ENST00000562754 CORO1AP31146 461 aaKnown RBP17.21■□□□□ 0.35
VPS4A-202ENST00000562754 CTNNA1P35221 906 aaKnown RBP17.21■□□□□ 0.35
VPS4A-202ENST00000562754 ADRA1BP35368 520 aa17.21■□□□□ 0.35
VPS4A-202ENST00000562754 SCAPQ12770 1279 aa17.21■□□□□ 0.35
VPS4A-202ENST00000562754 CA9Q16790 459 aa17.21■□□□□ 0.35
VPS4A-202ENST00000562754 HADHQ16836 314 aaKnown RBP17.21■□□□□ 0.35
VPS4A-202ENST00000562754 MEI1Q5TIA1 1274 aa17.21■□□□□ 0.35
VPS4A-202ENST00000562754 LRRC38Q5VT99 294 aa17.21■□□□□ 0.35
VPS4A-202ENST00000562754 NUGGCQ68CJ6 796 aa17.21■□□□□ 0.35
VPS4A-202ENST00000562754 Q6ZNB5 142 aa17.21■□□□□ 0.35
VPS4A-202ENST00000562754 SMARCD2Q92925 531 aa17.21■□□□□ 0.35
VPS4A-202ENST00000562754 HES6Q96HZ4 224 aa17.21■□□□□ 0.35
VPS4A-202ENST00000562754 C16orf45Q96MC5 204 aaPredicted RBP17.21■□□□□ 0.35
VPS4A-202ENST00000562754 TLR10Q9BXR5 811 aa17.21■□□□□ 0.35
VPS4A-202ENST00000562754 TRPV4Q9HBA0 871 aa17.21■□□□□ 0.35
VPS4A-202ENST00000562754 KLHL11Q9NVR0 708 aa17.21■□□□□ 0.35
VPS4A-202ENST00000562754 AP4E1Q9UPM8 1137 aa17.21■□□□□ 0.35
VPS4A-202ENST00000562754 SNX10Q9Y5X0 201 aa17.21■□□□□ 0.35
VPS4A-202ENST00000562754 PAGE1O75459 146 aa17.2■□□□□ 0.34
VPS4A-202ENST00000562754 SLC2A3P11169 496 aa17.2■□□□□ 0.34
VPS4A-202ENST00000562754 LAMP2P13473 410 aa17.2■□□□□ 0.34
VPS4A-202ENST00000562754 SP100P23497 879 aaPredicted RBP17.2■□□□□ 0.34
VPS4A-202ENST00000562754 MSNP26038 577 aaKnown RBP17.2■□□□□ 0.34
VPS4A-202ENST00000562754 GGCXP38435 758 aa17.2■□□□□ 0.34
VPS4A-202ENST00000562754 VIPR2P41587 438 aa17.2■□□□□ 0.34
VPS4A-202ENST00000562754 TFF2Q03403 129 aa17.2■□□□□ 0.34
VPS4A-202ENST00000562754 KCNT1Q5JUK3 1230 aa17.2■□□□□ 0.34
VPS4A-202ENST00000562754 PIK3R6Q5UE93 754 aa17.2■□□□□ 0.34
VPS4A-202ENST00000562754 NADSYN1Q6IA69 706 aa17.2■□□□□ 0.34
VPS4A-202ENST00000562754 POLNQ7Z5Q5 900 aa17.2■□□□□ 0.34
VPS4A-202ENST00000562754 DDX42Q86XP3 938 aaKnown RBP eCLIP17.2■□□□□ 0.34
VPS4A-202ENST00000562754 RHOT1Q8IXI2 618 aa17.2■□□□□ 0.34
VPS4A-202ENST00000562754 TTC16Q8NEE8 873 aa17.2■□□□□ 0.34
VPS4A-202ENST00000562754 ST13P5Q8NFI4 369 aaPredicted RBP17.2■□□□□ 0.34
VPS4A-202ENST00000562754 TEKT4Q8WW24 435 aa17.2■□□□□ 0.34
VPS4A-202ENST00000562754 ALG3Q92685 438 aa17.2■□□□□ 0.34
VPS4A-202ENST00000562754 LRRC3BQ96PB8 259 aa17.2■□□□□ 0.34
VPS4A-202ENST00000562754 KIF9Q9HAQ2 790 aa17.2■□□□□ 0.34
VPS4A-202ENST00000562754 TMEM51Q9NW97 253 aa17.2■□□□□ 0.34
VPS4A-202ENST00000562754 MIF4GDA9UHW6 222 aaKnown RBP17.19■□□□□ 0.34
VPS4A-202ENST00000562754 ENC1O14682 589 aa17.19■□□□□ 0.34
VPS4A-202ENST00000562754 KRT7P08729 469 aa17.19■□□□□ 0.34
VPS4A-202ENST00000562754 HARS2P49590 506 aaKnown RBP17.19■□□□□ 0.34
VPS4A-202ENST00000562754 PEX5P50542 639 aa17.19■□□□□ 0.34
VPS4A-202ENST00000562754 DNA2P51530 1060 aa17.19■□□□□ 0.34
VPS4A-202ENST00000562754 AIF1P55008 147 aa17.19■□□□□ 0.34
VPS4A-202ENST00000562754 ETF1P62495 437 aaKnown RBP17.19■□□□□ 0.34
VPS4A-202ENST00000562754 SMAD2Q15796 467 aaKnown RBP17.19■□□□□ 0.34
VPS4A-202ENST00000562754 BOLA3Q53S33 107 aa17.19■□□□□ 0.34
VPS4A-202ENST00000562754 EFHC2Q5JST6 749 aa17.19■□□□□ 0.34
VPS4A-202ENST00000562754 ARTNQ5T4W7 220 aa17.19■□□□□ 0.34
VPS4A-202ENST00000562754 ERMARDQ5T6L9 678 aa17.19■□□□□ 0.34
VPS4A-202ENST00000562754 DENND1CQ8IV53 801 aa17.19■□□□□ 0.34
VPS4A-202ENST00000562754 UNC45BQ8IWX7 931 aa17.19■□□□□ 0.34
VPS4A-202ENST00000562754 PYROXD2Q8N2H3 581 aa17.19■□□□□ 0.34
VPS4A-202ENST00000562754 CELF5Q8N6W0 485 aaKnown RBP17.19■□□□□ 0.34
VPS4A-202ENST00000562754 ATP6V0D2Q8N8Y2 350 aa17.19■□□□□ 0.34
VPS4A-202ENST00000562754 HSPH1Q92598 858 aa17.19■□□□□ 0.34
VPS4A-202ENST00000562754 BTN2A3PQ96KV6 586 aa17.19■□□□□ 0.34
VPS4A-202ENST00000562754 KCTD15Q96SI1 283 aaPredicted RBP17.19■□□□□ 0.34
VPS4A-202ENST00000562754 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.19■□□□□ 0.34
VPS4A-202ENST00000562754 EPS15L1Q9UBC2 864 aa17.19■□□□□ 0.34
VPS4A-202ENST00000562754 AGO1Q9UL18 857 aaKnown RBP17.19■□□□□ 0.34
VPS4A-202ENST00000562754 SH3BP1Q9Y3L3 701 aa17.19■□□□□ 0.34
VPS4A-202ENST00000562754 PCDHA3Q9Y5H8 950 aa17.19■□□□□ 0.34
VPS4A-202ENST00000562754 E2F8A0AVK6 867 aa17.18■□□□□ 0.34
VPS4A-202ENST00000562754 CCDC66A2RUB6 948 aa17.18■□□□□ 0.34
VPS4A-202ENST00000562754 ESPNB1AK53 854 aa17.18■□□□□ 0.34
VPS4A-202ENST00000562754 FAM72CH0Y354 149 aa17.18■□□□□ 0.34
VPS4A-202ENST00000562754 ACSL4O60488 711 aa17.18■□□□□ 0.34
VPS4A-202ENST00000562754 KRT1P04264 644 aa17.18■□□□□ 0.34
VPS4A-202ENST00000562754 ATP1A1P05023 1023 aaKnown RBP17.18■□□□□ 0.34
VPS4A-202ENST00000562754 ARSEP51690 589 aa17.18■□□□□ 0.34
VPS4A-202ENST00000562754 SEMA3BQ13214 749 aa17.18■□□□□ 0.34
VPS4A-202ENST00000562754 ARL13BQ3SXY8 428 aa17.18■□□□□ 0.34
VPS4A-202ENST00000562754 FAM133BQ5BKY9 247 aaKnown RBP17.18■□□□□ 0.34
VPS4A-202ENST00000562754 MS4A13Q5J8X5 152 aa17.18■□□□□ 0.34
VPS4A-202ENST00000562754 FAM72AQ5TYM5 149 aa17.18■□□□□ 0.34
VPS4A-202ENST00000562754 DCAF12L1Q5VU92 463 aa17.18■□□□□ 0.34
VPS4A-202ENST00000562754 TANGO2Q6ICL3 276 aa17.18■□□□□ 0.34
VPS4A-202ENST00000562754 PTCRAQ6ISU1 281 aaPredicted RBP17.18■□□□□ 0.34
VPS4A-202ENST00000562754 FAM72DQ6L9T8 149 aa17.18■□□□□ 0.34
VPS4A-202ENST00000562754 HTR3DQ70Z44 454 aa17.18■□□□□ 0.34
VPS4A-202ENST00000562754 OTOP3Q7RTS5 596 aa17.18■□□□□ 0.34
VPS4A-202ENST00000562754 FAM72BQ86X60 149 aa17.18■□□□□ 0.34
VPS4A-202ENST00000562754 PSTKQ8IV42 348 aaKnown RBP17.18■□□□□ 0.34
VPS4A-202ENST00000562754 BBS7Q8IWZ6 715 aa17.18■□□□□ 0.34
VPS4A-202ENST00000562754 KATNAL2Q8IYT4 538 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms