RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 SFTPA1Q8IWL2 248 aa10.18□□□□□ -0.78
CLK3-208ENST00000562626 FAM217AQ8IXS0 508 aa10.18□□□□□ -0.78
CLK3-208ENST00000562626 YAF2Q8IY57 180 aa10.18□□□□□ -0.78
CLK3-208ENST00000562626 ADGRG2Q8IZP9 1017 aa10.18□□□□□ -0.78
CLK3-208ENST00000562626 CCDC185Q8N715 623 aa10.18□□□□□ -0.78
CLK3-208ENST00000562626 CENPIQ92674 756 aaPredicted RBP10.18□□□□□ -0.78
CLK3-208ENST00000562626 EZH1Q92800 747 aaPredicted RBP10.18□□□□□ -0.78
CLK3-208ENST00000562626 CCDC42Q96M95 316 aa10.18□□□□□ -0.78
CLK3-208ENST00000562626 PRICKLE1Q96MT3 831 aaPredicted RBP10.18□□□□□ -0.78
CLK3-208ENST00000562626 PEBP4Q96S96 227 aa10.18□□□□□ -0.78
CLK3-208ENST00000562626 DEF6Q9H4E7 631 aa10.18□□□□□ -0.78
CLK3-208ENST00000562626 ECT2Q9H8V3 914 aa10.18□□□□□ -0.78
CLK3-208ENST00000562626 FBRSL1Q9HCM7 1045 aaKnown RBP10.18□□□□□ -0.78
CLK3-208ENST00000562626 CLEC4EQ9ULY5 219 aa10.18□□□□□ -0.78
CLK3-208ENST00000562626 TLR6Q9Y2C9 796 aa10.18□□□□□ -0.78
CLK3-208ENST00000562626 FANCMQ8IYD8 2048 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 MUC6Q6W4X9 2439 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 PI4K2BG5E9Z4 385 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 TSPAN3O60637 253 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 ENDOD1O94919 500 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 MOCS2O96007 188 aaPredicted RBP10.17□□□□□ -0.78
CLK3-208ENST00000562626 GJA4P35212 333 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 OPRD1P41143 372 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 PTPN9P43378 593 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 SLC6A11P48066 632 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 CXCR3P49682 368 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 SNX16P57768 344 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 CCZ1BP86790 482 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 CCZ1P86791 482 aaPredicted RBP10.17□□□□□ -0.78
CLK3-208ENST00000562626 RING1Q06587 406 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 NNTQ13423 1086 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 DHCR24Q15392 516 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 TSR1Q2NL82 804 aaKnown RBP10.17□□□□□ -0.78
CLK3-208ENST00000562626 SLC44A4Q53GD3 710 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 PIK3R6Q5UE93 754 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 RFWD3Q6PCD5 774 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 TPGS1Q6ZTW0 290 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 CYP4V2Q6ZWL3 525 aaPredicted RBP10.17□□□□□ -0.78
CLK3-208ENST00000562626 C14orf80Q86SX3 495 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 VPS36Q86VN1 386 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 FAM131BQ86XD5 332 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 DDX42Q86XP3 938 aaKnown RBP eCLIP10.17□□□□□ -0.78
CLK3-208ENST00000562626 FAM172AQ8WUF8 416 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 EDAQ92838 391 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 IRF7Q92985 503 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 BHMTQ93088 406 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 PGAP3Q96FM1 320 aaPredicted RBP10.17□□□□□ -0.78
CLK3-208ENST00000562626 PDLIM2Q96JY6 352 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 SERPINB11Q96P15 392 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 PRMT1Q99873 361 aaKnown RBP10.17□□□□□ -0.78
CLK3-208ENST00000562626 BAG1Q99933 345 aaPredicted RBP10.17□□□□□ -0.78
CLK3-208ENST00000562626 DESI2Q9BSY9 194 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 NUP85Q9BW27 656 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 OSGEPQ9NPF4 335 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 PLK2Q9NYY3 685 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 SALL4Q9UJQ4 1053 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 MTF2Q9Y483 593 aaPredicted RBP10.17□□□□□ -0.78
CLK3-208ENST00000562626 EPN1Q9Y6I3 576 aaPredicted RBP10.17□□□□□ -0.78
CLK3-208ENST00000562626 PIAS3Q9Y6X2 628 aa10.17□□□□□ -0.78
CLK3-208ENST00000562626 ANKRD62A6NC57 917 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 FAM86C2PA6NEL3 165 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 SPECC1L-ADORA2AF8WAN1 911 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 ACSL4O60488 711 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 PAGE1O75459 146 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 NDUFA10O95299 355 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 H2AFZP0C0S5 128 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 SDC4P31431 198 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 CTHP32929 405 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 ZNF143P52747 638 aaPredicted RBP10.16□□□□□ -0.78
CLK3-208ENST00000562626 DEUP1Q05D60 604 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 PDGFRLQ15198 375 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 MLF2Q15773 248 aaPredicted RBP10.16□□□□□ -0.78
CLK3-208ENST00000562626 ITPRIPL2Q3MIP1 535 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 FYB2Q5VWT5 728 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 RAP1GAP2Q684P5 730 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 CWF19L1Q69YN2 538 aaKnown RBP10.16□□□□□ -0.78
CLK3-208ENST00000562626 TXNRD3NBQ6F5E7 133 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 ASTLQ6HA08 431 aaPredicted RBP10.16□□□□□ -0.78
CLK3-208ENST00000562626 CC2D1AQ6P1N0 951 aaPredicted RBP10.16□□□□□ -0.78
CLK3-208ENST00000562626 DCUN1D2Q6PH85 259 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 TRIM67Q6ZTA4 783 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 TPRG1Q6ZUI0 275 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 H2AFVQ71UI9 128 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 CIR1Q86X95 450 aaPredicted RBP10.16□□□□□ -0.78
CLK3-208ENST00000562626 TMTC1Q8IUR5 882 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 UBALD2Q8IYN6 164 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 ZNF683Q8IZ20 524 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 SIX5Q8N196 739 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 ZNF687Q8N1G0 1237 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 PHTF2Q8N3S3 785 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 NAT16Q8N8M0 369 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 WFDC5Q8TCV5 224 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 DNASE1L2Q92874 299 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 TRIM62Q9BVG3 475 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 FOXQ1Q9C009 403 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 LACRTQ9GZZ8 138 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 TRPV5Q9NQA5 729 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 ARHGEF3Q9NR81 526 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 SPHK2Q9NRA0 654 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 PARVAQ9NVD7 372 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms