RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 TLR6Q9Y2C9 796 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 AAR2Q9Y312 384 aaKnown RBP7.77□□□□□ -1.17
VPS39-204ENST00000561818 HEY1Q9Y5J3 304 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 COL4A4P53420 1690 aaPredicted RBP7.76□□□□□ -1.17
VPS39-204ENST00000561818 TSC2P49815 1807 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 WASH4PA8MWX3 477 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 HHLA1C9JL84 531 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 GRAP2O75791 330 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 KRT37O76014 449 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 ANXA9O76027 345 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 LATS1O95835 1130 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 FAM107AO95990 144 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 IGLV3-25P01717 112 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 CCL5P13501 91 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 BDNFP23560 247 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 ACAT1P24752 427 aaKnown RBP7.76□□□□□ -1.17
VPS39-204ENST00000561818 YY1P25490 414 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 RPL22P35268 128 aaKnown RBP7.76□□□□□ -1.17
VPS39-204ENST00000561818 ETFBP38117 255 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 MMP13P45452 471 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 MRPS25P82663 173 aaKnown RBP7.76□□□□□ -1.17
VPS39-204ENST00000561818 PDIA2Q13087 525 aaKnown RBP7.76□□□□□ -1.17
VPS39-204ENST00000561818 SEMA3BQ13214 749 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 NME3Q13232 169 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 DPYSQ14117 519 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 PRKD1Q15139 912 aaPredicted RBP7.76□□□□□ -1.17
VPS39-204ENST00000561818 DBN1Q16643 649 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 ATP13A4Q4VNC1 1196 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 TTMPQ5BVD1 217 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 TNFAIP8L3Q5GJ75 292 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 CLLU1OSQ5K130 101 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 VARS2Q5ST30 1063 aaKnown RBP7.76□□□□□ -1.17
VPS39-204ENST00000561818 TTC39BQ5VTQ0 682 aaPredicted RBP7.76□□□□□ -1.17
VPS39-204ENST00000561818 TXNRD3NBQ6F5E7 133 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 FUT10Q6P4F1 479 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 FBXO46Q6PJ61 603 aaPredicted RBP7.76□□□□□ -1.17
VPS39-204ENST00000561818 SLC39A5Q6ZMH5 540 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 FAM131BQ86XD5 332 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 CMTR2Q8IYT2 770 aaKnown RBP7.76□□□□□ -1.17
VPS39-204ENST00000561818 BBS5Q8N3I7 341 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 PQLC3Q8N755 202 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 FAM71DQ8N9W8 422 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 C3orf58Q8NDZ4 430 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 SH3TC2Q8TF17 1288 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 PTCD2Q8WV60 388 aaKnown RBP7.76□□□□□ -1.17
VPS39-204ENST00000561818 CPT1BQ92523 772 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 GRAMD1AQ96CP6 724 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 TBC1D31Q96DN5 1066 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 SMC6Q96SB8 1091 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 UNC93B1Q9H1C4 597 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 EPN3Q9H201 632 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 ADAM7Q9H2U9 754 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 SEMA4AQ9H3S1 761 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 ACSS3Q9H6R3 686 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 ARHGEF4Q9NR80 690 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 RAB6BQ9NRW1 208 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 ETNK2Q9NVF9 386 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 MIOSQ9NXC5 875 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 NINJ2Q9NZG7 142 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 IL37Q9NZH6 218 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 BCCIPQ9P287 314 aaKnown RBP eCLIP7.76□□□□□ -1.17
VPS39-204ENST00000561818 PPARGC1AQ9UBK2 798 aaKnown RBP7.76□□□□□ -1.17
VPS39-204ENST00000561818 NOVA2Q9UNW9 492 aaKnown RBP7.76□□□□□ -1.17
VPS39-204ENST00000561818 HBS1LQ9Y450 684 aaKnown RBP7.76□□□□□ -1.17
VPS39-204ENST00000561818 NME7Q9Y5B8 376 aa7.76□□□□□ -1.17
VPS39-204ENST00000561818 PATJQ8NI35 1801 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 YJEFN3A6XGL0 299 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 E7ENQ6 273 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 TULP2O00295 520 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 EBAG9O00559 213 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 NDUFAB1O14561 156 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 NRP1O14786 923 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 DCLK1O15075 740 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 TM9SF1O15321 606 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 PRPF4O43172 522 aaKnown RBP eCLIP7.75□□□□□ -1.17
VPS39-204ENST00000561818 DGKIO75912 1065 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 FAM155BO75949 473 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 KRT38O76015 456 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 NEBLO76041 1014 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 ZWINTO95229 277 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 ACSL3O95573 720 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 CPP00450 1065 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 INHBAP08476 426 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 USP17L7P0C7H9 530 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 CSH1P0DML2 217 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 CSH2P0DML3 217 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 CPB1P15086 417 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 TCF4P15884 667 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 KRT15P19012 456 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 IL4RP24394 825 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 YWHAQP27348 245 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 EPHB2P29323 1055 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 HADHAP40939 763 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 VPS41P49754 854 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 NDST2P52849 883 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 MAGOHP61326 146 aaKnown RBP7.75□□□□□ -1.17
VPS39-204ENST00000561818 GNGT1P63211 74 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 IL9RQ01113 521 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 PPIDQ08752 370 aaKnown RBP7.75□□□□□ -1.17
VPS39-204ENST00000561818 GALNT2Q10471 571 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 151.6 ms