RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 H7C0C1 242 aa22.02■■□□□ 1.12
CLN3-209ENST00000561689 MAP2K7O14733 419 aa22.02■■□□□ 1.12
CLN3-209ENST00000561689 CTSAP10619 480 aa22.02■■□□□ 1.12
CLN3-209ENST00000561689 ZFXP17010 805 aaPredicted RBP22.02■■□□□ 1.12
CLN3-209ENST00000561689 CCR1P32246 355 aa22.02■■□□□ 1.12
CLN3-209ENST00000561689 ATP5OP48047 213 aa22.02■■□□□ 1.12
CLN3-209ENST00000561689 EFEMP1Q12805 493 aa22.02■■□□□ 1.12
CLN3-209ENST00000561689 SLC10A2Q12908 348 aaPredicted RBP22.02■■□□□ 1.12
CLN3-209ENST00000561689 SEMA3BQ13214 749 aa22.02■■□□□ 1.12
CLN3-209ENST00000561689 DARS2Q6PI48 645 aaKnown RBP22.02■■□□□ 1.12
CLN3-209ENST00000561689 UNC45BQ8IWX7 931 aa22.02■■□□□ 1.12
CLN3-209ENST00000561689 SP7Q8TDD2 431 aaPredicted RBP22.02■■□□□ 1.12
CLN3-209ENST00000561689 SERPINB11Q96P15 392 aa22.02■■□□□ 1.12
CLN3-209ENST00000561689 MTPAPQ9NVV4 582 aaKnown RBP eCLIP22.02■■□□□ 1.12
CLN3-209ENST00000561689 ARHGEF38Q9NXL2 777 aa22.02■■□□□ 1.12
CLN3-209ENST00000561689 CLIC5Q9NZA1 410 aa22.02■■□□□ 1.12
CLN3-209ENST00000561689 YIPF1Q9Y548 306 aa22.02■■□□□ 1.12
CLN3-209ENST00000561689 PRRG1O14668 218 aa22.01■■□□□ 1.11
CLN3-209ENST00000561689 SPATA31D3P0C874 917 aa22.01■■□□□ 1.11
CLN3-209ENST00000561689 ALDH1A3P47895 512 aa22.01■■□□□ 1.11
CLN3-209ENST00000561689 MSANTD2Q6P1R3 559 aa22.01■■□□□ 1.11
CLN3-209ENST00000561689 SPATA31D4Q6ZUB0 917 aa22.01■■□□□ 1.11
CLN3-209ENST00000561689 FAM71DQ8N9W8 422 aa22.01■■□□□ 1.11
CLN3-209ENST00000561689 RSAD2Q8WXG1 361 aa22.01■■□□□ 1.11
CLN3-209ENST00000561689 SNF8Q96H20 258 aa22.01■■□□□ 1.11
CLN3-209ENST00000561689 FMO2Q99518 471 aa22.01■■□□□ 1.11
CLN3-209ENST00000561689 TTLL2Q9BWV7 592 aa22.01■■□□□ 1.11
CLN3-209ENST00000561689 ALG13Q9NP73 1137 aaKnown RBP22.01■■□□□ 1.11
CLN3-209ENST00000561689 HSFX1Q9UBD0 423 aa22.01■■□□□ 1.11
CLN3-209ENST00000561689 ATP8B1O43520 1251 aa22.01■■□□□ 1.11
CLN3-209ENST00000561689 CNPP09543 421 aaKnown RBP22.01■■□□□ 1.11
CLN3-209ENST00000561689 ELF1P32519 619 aa22.01■■□□□ 1.11
CLN3-209ENST00000561689 PSEN1P49768 467 aa22.01■■□□□ 1.11
CLN3-209ENST00000561689 NRLP54845 237 aa22.01■■□□□ 1.11
CLN3-209ENST00000561689 CALCOCO2Q13137 446 aa22.01■■□□□ 1.11
CLN3-209ENST00000561689 NNTQ13423 1086 aa22.01■■□□□ 1.11
CLN3-209ENST00000561689 DPYSQ14117 519 aa22.01■■□□□ 1.11
CLN3-209ENST00000561689 C10orf120Q5SQS8 335 aa22.01■■□□□ 1.11
CLN3-209ENST00000561689 FAM182AQ5T1J6 154 aa22.01■■□□□ 1.11
CLN3-209ENST00000561689 TMC7Q7Z402 723 aa22.01■■□□□ 1.11
CLN3-209ENST00000561689 MIB1Q86YT6 1006 aa22.01■■□□□ 1.11
CLN3-209ENST00000561689 NETO2Q8NC67 525 aa22.01■■□□□ 1.11
CLN3-209ENST00000561689 TSEN2Q8NCE0 465 aaKnown RBP22.01■■□□□ 1.11
CLN3-209ENST00000561689 ART4Q93070 314 aa22.01■■□□□ 1.11
CLN3-209ENST00000561689 SIK2Q9H0K1 926 aa22.01■■□□□ 1.11
CLN3-209ENST00000561689 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP22.01■■□□□ 1.11
CLN3-209ENST00000561689 FNIP2Q9P278 1114 aa22.01■■□□□ 1.11
CLN3-209ENST00000561689 TP73O15350 636 aa22■■□□□ 1.11
CLN3-209ENST00000561689 MOCS2O96007 188 aaPredicted RBP22■■□□□ 1.11
CLN3-209ENST00000561689 ZDHHC11BP0C7U3 371 aa22■■□□□ 1.11
CLN3-209ENST00000561689 CTNNB1P35222 781 aa22■■□□□ 1.11
CLN3-209ENST00000561689 TPI1P60174 286 aa22■■□□□ 1.11
CLN3-209ENST00000561689 BRMS1LQ5PSV4 323 aa22■■□□□ 1.11
CLN3-209ENST00000561689 CEP295NLQ96MC4 621 aa22■■□□□ 1.11
CLN3-209ENST00000561689 ZNF512Q96ME7 567 aaPredicted RBP22■■□□□ 1.11
CLN3-209ENST00000561689 CCSER2Q9H7U1 834 aa22■■□□□ 1.11
CLN3-209ENST00000561689 WHRNQ9P202 907 aa22■■□□□ 1.11
CLN3-209ENST00000561689 STK39Q9UEW8 545 aa22■■□□□ 1.11
CLN3-209ENST00000561689 XPO7Q9UIA9 1087 aaKnown RBP22■■□□□ 1.11
CLN3-209ENST00000561689 MYO16Q9Y6X6 1858 aa22■■□□□ 1.11
CLN3-209ENST00000561689 CXCL14O95715 111 aa21.99■■□□□ 1.11
CLN3-209ENST00000561689 HMGA1P17096 107 aaKnown RBP21.99■■□□□ 1.11
CLN3-209ENST00000561689 ITIH2P19823 946 aa21.99■■□□□ 1.11
CLN3-209ENST00000561689 BMPR1AP36894 532 aa21.99■■□□□ 1.11
CLN3-209ENST00000561689 TWF1Q12792 350 aa21.99■■□□□ 1.11
CLN3-209ENST00000561689 GPS1Q13098 491 aa21.99■■□□□ 1.11
CLN3-209ENST00000561689 P3H1Q32P28 736 aa21.99■■□□□ 1.11
CLN3-209ENST00000561689 UBE2OQ9C0C9 1292 aaKnown RBP21.99■■□□□ 1.11
CLN3-209ENST00000561689 MTIF3Q9H2K0 278 aaKnown RBP21.99■■□□□ 1.11
CLN3-209ENST00000561689 RXFP1Q9HBX9 757 aa21.99■■□□□ 1.11
CLN3-209ENST00000561689 DTLQ9NZJ0 730 aa21.99■■□□□ 1.11
CLN3-209ENST00000561689 TLR6Q9Y2C9 796 aa21.99■■□□□ 1.11
CLN3-209ENST00000561689 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP21.99■■□□□ 1.11
CLN3-209ENST00000561689 PAGE1O75459 146 aa21.99■■□□□ 1.11
CLN3-209ENST00000561689 LRIG2O94898 1065 aa21.99■■□□□ 1.11
CLN3-209ENST00000561689 MYOGP15173 224 aa21.99■■□□□ 1.11
CLN3-209ENST00000561689 ITGA8P53708 1063 aa21.99■■□□□ 1.11
CLN3-209ENST00000561689 PPP2R5DQ14738 602 aa21.99■■□□□ 1.11
CLN3-209ENST00000561689 SPRED2Q7Z698 418 aa21.99■■□□□ 1.11
CLN3-209ENST00000561689 CCHCR1Q8TD31 782 aa21.99■■□□□ 1.11
CLN3-209ENST00000561689 EPAS1Q99814 870 aa21.99■■□□□ 1.11
CLN3-209ENST00000561689 PCDH9Q9HC56 1237 aa21.99■■□□□ 1.11
CLN3-209ENST00000561689 MARCH2Q9P0N8 246 aa21.99■■□□□ 1.11
CLN3-209ENST00000561689 KIAA1671Q9BY89 1806 aa21.99■■□□□ 1.11
CLN3-209ENST00000561689 PLXNA3P51805 1871 aa21.98■■□□□ 1.11
CLN3-209ENST00000561689 KCNU1A8MYU2 1149 aa21.98■■□□□ 1.11
CLN3-209ENST00000561689 MFSD11O43934 449 aa21.98■■□□□ 1.11
CLN3-209ENST00000561689 TLR5O60602 858 aa21.98■■□□□ 1.11
CLN3-209ENST00000561689 CSH1P0DML2 217 aa21.98■■□□□ 1.11
CLN3-209ENST00000561689 CSH2P0DML3 217 aa21.98■■□□□ 1.11
CLN3-209ENST00000561689 SRGAP2BP0DMP2 458 aa21.98■■□□□ 1.11
CLN3-209ENST00000561689 ERCC2P18074 760 aa21.98■■□□□ 1.11
CLN3-209ENST00000561689 NR2C2P49116 596 aa21.98■■□□□ 1.11
CLN3-209ENST00000561689 TBX4P57082 545 aa21.98■■□□□ 1.11
CLN3-209ENST00000561689 TAF12Q16514 161 aa21.98■■□□□ 1.11
CLN3-209ENST00000561689 IZUMO3Q5VZ72 239 aa21.98■■□□□ 1.11
CLN3-209ENST00000561689 GPR65Q8IYL9 337 aa21.98■■□□□ 1.11
CLN3-209ENST00000561689 TCEAL8Q8IYN2 117 aa21.98■■□□□ 1.11
CLN3-209ENST00000561689 FCRL2Q96LA5 508 aaPredicted RBP21.98■■□□□ 1.11
CLN3-209ENST00000561689 HAPLN3Q96S86 360 aa21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms