RNA–Protein interactions for RNA: ENST00000560447.1

RTF1-206, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-206ENST00000560447 CXCL16Q9H2A7 254 aa10.04□□□□□ -0.8
RTF1-206ENST00000560447 POPDC2Q9HBU9 364 aa10.04□□□□□ -0.8
RTF1-206ENST00000560447 FAM105AQ9NUU6 356 aa10.04□□□□□ -0.8
RTF1-206ENST00000560447 CHMP2BQ9UQN3 213 aa10.04□□□□□ -0.8
RTF1-206ENST00000560447 HEY1Q9Y5J3 304 aa10.04□□□□□ -0.8
RTF1-206ENST00000560447 CDY2AQ9Y6F7 541 aa10.04□□□□□ -0.8
RTF1-206ENST00000560447 PTPRDP23468 1912 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 ERI2A8K979 691 aaKnown RBP10.03□□□□□ -0.8
RTF1-206ENST00000560447 AP3B1O00203 1094 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 TNPO2O14787 897 aaKnown RBP10.03□□□□□ -0.8
RTF1-206ENST00000560447 TGDSO95455 350 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 APOEP02649 317 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 CYP11A1P05108 521 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 ATP5BP06576 529 aaKnown RBP10.03□□□□□ -0.8
RTF1-206ENST00000560447 SNRPAP09012 282 aaKnown RBP10.03□□□□□ -0.8
RTF1-206ENST00000560447 SLC10A3P09131 477 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 DHRS4L1P0CG22 281 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 CYBAP13498 195 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 KRT4P19013 534 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 CYP2B6P20813 491 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 DNAJB2P25686 324 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 LMO2P25791 158 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 FOXN2P32314 431 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 CCNFP41002 786 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 MLLT3P42568 568 aaPredicted RBP10.03□□□□□ -0.8
RTF1-206ENST00000560447 ZNF157P51786 506 aaPredicted RBP10.03□□□□□ -0.8
RTF1-206ENST00000560447 DAOAP59103 153 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 YWHAGP61981 247 aaKnown RBP eCLIP10.03□□□□□ -0.8
RTF1-206ENST00000560447 MGAT3Q09327 533 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 ADIGQ0VDE8 80 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 PTK7Q13308 1070 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 RIPK1Q13546 671 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 FRG1Q14331 258 aaKnown RBP10.03□□□□□ -0.8
RTF1-206ENST00000560447 SETDB1Q15047 1291 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 PRKD1Q15139 912 aaPredicted RBP10.03□□□□□ -0.8
RTF1-206ENST00000560447 MAPRE1Q15691 268 aaKnown RBP10.03□□□□□ -0.8
RTF1-206ENST00000560447 RAB41Q5JT25 222 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 STXBP5Q5T5C0 1151 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 FYB2Q5VWT5 728 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 CST9Q5W186 159 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 RGMBQ6NW40 437 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 KCNT2Q6UVM3 1135 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 TIFABQ6ZNK6 161 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 CLEC20AQ6ZU45 233 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 CAND1Q86VP6 1230 aaKnown RBP10.03□□□□□ -0.8
RTF1-206ENST00000560447 GSDMBQ8TAX9 411 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 GDAP1Q8TB36 358 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 RNF139Q8WU17 664 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 HTR3CQ8WXA8 447 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 SENP8Q96LD8 212 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 EBNA1BP2Q99848 306 aaKnown RBP10.03□□□□□ -0.8
RTF1-206ENST00000560447 SYT15Q9BQS2 421 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 TUBB6Q9BUF5 446 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 B3GNT5Q9BYG0 378 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 SENP6Q9GZR1 1112 aaPredicted RBP10.03□□□□□ -0.8
RTF1-206ENST00000560447 ETNK1Q9HBU6 452 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 TXLNGQ9NUQ3 528 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 GPATCH2LQ9NWQ4 482 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.03□□□□□ -0.8
RTF1-206ENST00000560447 DTLQ9NZJ0 730 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 KLK14Q9P0G3 267 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 ZC3H7BQ9UGR2 993 aaKnown RBP10.03□□□□□ -0.8
RTF1-206ENST00000560447 TSR3Q9UJK0 312 aaKnown RBP10.03□□□□□ -0.8
RTF1-206ENST00000560447 PHTF1Q9UMS5 762 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 TTLL3Q9Y4R7 772 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 PCDHA11Q9Y5I1 949 aa10.03□□□□□ -0.8
RTF1-206ENST00000560447 FAM159BA6NKW6 160 aa10.02□□□□□ -0.81
RTF1-206ENST00000560447 PIK3R2O00459 728 aa10.02□□□□□ -0.81
RTF1-206ENST00000560447 INPPL1O15357 1258 aa10.02□□□□□ -0.81
RTF1-206ENST00000560447 SPAG7O75391 227 aa10.02□□□□□ -0.81
RTF1-206ENST00000560447 C1QAP02745 245 aa10.02□□□□□ -0.81
RTF1-206ENST00000560447 TROVE2P10155 538 aaKnown RBP eCLIP10.02□□□□□ -0.81
RTF1-206ENST00000560447 ODC1P11926 461 aa10.02□□□□□ -0.81
RTF1-206ENST00000560447 CST5P28325 142 aaPredicted RBP10.02□□□□□ -0.81
RTF1-206ENST00000560447 TKTP29401 623 aaKnown RBP10.02□□□□□ -0.81
RTF1-206ENST00000560447 RPA3P35244 121 aaPredicted RBP10.02□□□□□ -0.81
RTF1-206ENST00000560447 PSMC4P43686 418 aa10.02□□□□□ -0.81
RTF1-206ENST00000560447 NEK3P51956 506 aa10.02□□□□□ -0.81
RTF1-206ENST00000560447 BEX3Q00994 111 aa10.02□□□□□ -0.81
RTF1-206ENST00000560447 DEUP1Q05D60 604 aa10.02□□□□□ -0.81
RTF1-206ENST00000560447 CCL14Q16627 93 aa10.02□□□□□ -0.81
RTF1-206ENST00000560447 PARP6Q2NL67 630 aa10.02□□□□□ -0.81
RTF1-206ENST00000560447 ARL13BQ3SXY8 428 aa10.02□□□□□ -0.81
RTF1-206ENST00000560447 RAB6CQ53S08 254 aa10.02□□□□□ -0.81
RTF1-206ENST00000560447 ARMC3Q5W041 872 aa10.02□□□□□ -0.81
RTF1-206ENST00000560447 LRRC8BQ6P9F7 803 aa10.02□□□□□ -0.81
RTF1-206ENST00000560447 LVRNQ6Q4G3 990 aa10.02□□□□□ -0.81
RTF1-206ENST00000560447 SH2D5Q6ZV89 423 aa10.02□□□□□ -0.81
RTF1-206ENST00000560447 PAQR9Q6ZVX9 377 aa10.02□□□□□ -0.81
RTF1-206ENST00000560447 FAM35AQ86V20 835 aa10.02□□□□□ -0.81
RTF1-206ENST00000560447 METTL23Q86XA0 190 aa10.02□□□□□ -0.81
RTF1-206ENST00000560447 C4orf33Q8N1A6 199 aa10.02□□□□□ -0.81
RTF1-206ENST00000560447 CCDC185Q8N715 623 aa10.02□□□□□ -0.81
RTF1-206ENST00000560447 CCDC63Q8NA47 563 aa10.02□□□□□ -0.81
RTF1-206ENST00000560447 ARRDC4Q8NCT1 418 aa10.02□□□□□ -0.81
RTF1-206ENST00000560447 ACMSDQ8TDX5 336 aa10.02□□□□□ -0.81
RTF1-206ENST00000560447 ZNF75CPQ92670 426 aaPredicted RBP10.02□□□□□ -0.81
RTF1-206ENST00000560447 TTC17Q96AE7 1141 aa10.02□□□□□ -0.81
RTF1-206ENST00000560447 FAM149B1Q96BN6 582 aa10.02□□□□□ -0.81
RTF1-206ENST00000560447 PGBD4Q96DM1 585 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms