RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 SYN2Q92777 582 aaPredicted RBP5.45□□□□□ -1.54
LDLR-209ENST00000558528 DLG3Q92796 817 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 KAT2BQ92831 832 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 MFSD14AQ96MC6 490 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 NLRP4Q96MN2 994 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 MSTO1Q9BUK6 570 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 FGFBP2Q9BYJ0 223 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 CEP41Q9BYV8 373 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 DNAI2Q9GZS0 605 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 QRSL1Q9H0R6 528 aaKnown RBP5.45□□□□□ -1.54
LDLR-209ENST00000558528 CDIP1Q9H305 208 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 TRIT1Q9H3H1 467 aaKnown RBP5.45□□□□□ -1.54
LDLR-209ENST00000558528 EPB41L1Q9H4G0 881 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 ASB7Q9H672 318 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 MMRN2Q9H8L6 949 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 TMEM8AQ9HCN3 771 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 POLD4Q9HCU8 107 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 SETD4Q9NVD3 440 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 GPRC5BQ9NZH0 403 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 HDAC6Q9UBN7 1215 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 PCDHGB3Q9Y5G1 929 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 CHD7Q9P2D1 2997 aa5.45□□□□□ -1.54
LDLR-209ENST00000558528 ZNF236Q9UL36 1845 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 A0A087WV62 115 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 A0A087WZ62 844 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 SSU72P8A0A1W2PR75 194 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 KBTBD13C9JR72 458 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 KIF2AO00139 706 aaPredicted RBP5.44□□□□□ -1.54
LDLR-209ENST00000558528 NCAM2O15394 837 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 SLC16A6O15403 523 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 FGF10O15520 208 aaPredicted RBP5.44□□□□□ -1.54
LDLR-209ENST00000558528 TEX33O43247 280 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 MAFKO60675 156 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 ADAMTS4O75173 837 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 AGR2O95994 175 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 ASGR1P07306 291 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 GSTM1P09488 218 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 CLTAP09496 248 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 SKILP12757 684 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 OSMP13725 252 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 RAB6AP20340 208 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 ANXA13P27216 316 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 SDHAP31040 664 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 HOXC8P31273 242 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 KRT9P35527 623 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 CYLC1P35663 651 aaPredicted RBP5.44□□□□□ -1.54
LDLR-209ENST00000558528 RXRGP48443 463 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 FMO5P49326 533 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 GPC3P51654 580 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 CLCN3P51790 818 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 MANFP55145 182 aaKnown RBP5.44□□□□□ -1.54
LDLR-209ENST00000558528 BCAR1P56945 870 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 NLRP11P59045 1033 aaKnown RBP5.44□□□□□ -1.54
LDLR-209ENST00000558528 KRT83P78385 493 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 ADAM17P78536 824 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 BEX3Q00994 111 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 ITGA7Q13683 1181 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 PSMD6Q15008 389 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 SNX17Q15036 470 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 SYCP1Q15431 976 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 KCNA10Q16322 511 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 IFI16Q16666 785 aaKnown RBP5.44□□□□□ -1.54
LDLR-209ENST00000558528 MUM1Q2TAK8 710 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 TUBB8Q3ZCM7 444 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 HSF5Q4G112 596 aaPredicted RBP5.44□□□□□ -1.54
LDLR-209ENST00000558528 CCDC38Q502W7 563 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 MIIPQ5JXC2 388 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 MARCH8Q5T0T0 291 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 ATF7IP2Q5U623 682 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 ESRP1Q6NXG1 681 aaKnown RBP5.44□□□□□ -1.54
LDLR-209ENST00000558528 NOTUMQ6P988 496 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 MPZL3Q6UWV2 235 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 CYP26C1Q6V0L0 522 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 CATSPER4Q7RTX7 472 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 VPS36Q86VN1 386 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 CCDC170Q8IYT3 715 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 TTC39CQ8N584 583 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 TRPV1Q8NER1 839 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 USP13Q92995 863 aaPredicted RBP5.44□□□□□ -1.54
LDLR-209ENST00000558528 SLC35C1Q96A29 364 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 JAKMIP2Q96AA8 810 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 ERP27Q96DN0 273 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 BORCS6Q96GS4 357 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 TCTN2Q96GX1 697 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 TMEM41AQ96HV5 264 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 Q96M66 194 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 PTCHD1Q96NR3 888 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 SPAG5Q96R06 1193 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 KCNJ15Q99712 375 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 BAG1Q99933 345 aaPredicted RBP5.44□□□□□ -1.54
LDLR-209ENST00000558528 FDXACB1Q9BRP7 624 aaPredicted RBP5.44□□□□□ -1.54
LDLR-209ENST00000558528 FAM213AQ9BRX8 229 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 CCDC94Q9BW85 323 aaPredicted RBP5.44□□□□□ -1.54
LDLR-209ENST00000558528 COLEC11Q9BWP8 271 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 IMPG2Q9BZV3 1241 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 FAM124BQ9H5Z6 455 aaPredicted RBP5.44□□□□□ -1.54
LDLR-209ENST00000558528 RPF1Q9H9Y2 349 aaKnown RBP5.44□□□□□ -1.54
LDLR-209ENST00000558528 PLEKHA5Q9HAU0 1116 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 CEP72Q9P209 647 aa5.44□□□□□ -1.54
LDLR-209ENST00000558528 UNC79Q9P2D8 2635 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms