RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 PPP1R2P3Q6NXS1 205 aa12.98□□□□□ -0.33
SLIRP-209ENST00000557342 SYT13Q7L8C5 426 aa12.98□□□□□ -0.33
SLIRP-209ENST00000557342 IRF2BP2Q7Z5L9 587 aa12.98□□□□□ -0.33
SLIRP-209ENST00000557342 PHTF2Q8N3S3 785 aa12.98□□□□□ -0.33
SLIRP-209ENST00000557342 ATP6V0D2Q8N8Y2 350 aa12.98□□□□□ -0.33
SLIRP-209ENST00000557342 ADAM32Q8TC27 787 aa12.98□□□□□ -0.33
SLIRP-209ENST00000557342 USP33Q8TEY7 942 aa12.98□□□□□ -0.33
SLIRP-209ENST00000557342 BHMTQ93088 406 aa12.98□□□□□ -0.33
SLIRP-209ENST00000557342 TMA16Q96EY4 203 aaKnown RBP12.98□□□□□ -0.33
SLIRP-209ENST00000557342 NUCKS1Q9H1E3 243 aaKnown RBP12.98□□□□□ -0.33
SLIRP-209ENST00000557342 SEMA4AQ9H3S1 761 aa12.98□□□□□ -0.33
SLIRP-209ENST00000557342 SEPT11Q9NVA2 429 aaKnown RBP12.98□□□□□ -0.33
SLIRP-209ENST00000557342 FAM86C1Q9NVL1 165 aa12.98□□□□□ -0.33
SLIRP-209ENST00000557342 DDIT4Q9NX09 232 aa12.98□□□□□ -0.33
SLIRP-209ENST00000557342 ZSCAN32Q9NX65 697 aa12.98□□□□□ -0.33
SLIRP-209ENST00000557342 PLK2Q9NYY3 685 aa12.98□□□□□ -0.33
SLIRP-209ENST00000557342 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.98□□□□□ -0.33
SLIRP-209ENST00000557342 AIPL1Q9NZN9 384 aa12.98□□□□□ -0.33
SLIRP-209ENST00000557342 FBXO10Q9UK96 956 aa12.98□□□□□ -0.33
SLIRP-209ENST00000557342 PCDHGA2Q9Y5H1 932 aa12.98□□□□□ -0.33
SLIRP-209ENST00000557342 A0A1W2PQJ5 194 aa12.97□□□□□ -0.33
SLIRP-209ENST00000557342 TYW5A2RUC4 315 aaKnown RBP12.97□□□□□ -0.33
SLIRP-209ENST00000557342 LRRC53A6NM62 1247 aa12.97□□□□□ -0.33
SLIRP-209ENST00000557342 CBFA2T2O43439 604 aa12.97□□□□□ -0.33
SLIRP-209ENST00000557342 TNFAIP3P21580 790 aa12.97□□□□□ -0.33
SLIRP-209ENST00000557342 HOXA6P31267 233 aa12.97□□□□□ -0.33
SLIRP-209ENST00000557342 CCR1P32246 355 aa12.97□□□□□ -0.33
SLIRP-209ENST00000557342 PBX1P40424 430 aa12.97□□□□□ -0.33
SLIRP-209ENST00000557342 SEC13P55735 322 aa12.97□□□□□ -0.33
SLIRP-209ENST00000557342 RNASE9P60153 205 aaKnown RBP12.97□□□□□ -0.33
SLIRP-209ENST00000557342 EIF4EBP2Q13542 120 aaPredicted RBP12.97□□□□□ -0.33
SLIRP-209ENST00000557342 E2F5Q15329 346 aa12.97□□□□□ -0.33
SLIRP-209ENST00000557342 CLEC16AQ2KHT3 1053 aa12.97□□□□□ -0.33
SLIRP-209ENST00000557342 C2orf27AQ580R0 203 aa12.97□□□□□ -0.33
SLIRP-209ENST00000557342 ZC3H12AQ5D1E8 599 aaKnown RBP12.97□□□□□ -0.33
SLIRP-209ENST00000557342 C10orf76Q5T2E6 689 aa12.97□□□□□ -0.33
SLIRP-209ENST00000557342 MPP7Q5T2T1 576 aa12.97□□□□□ -0.33
SLIRP-209ENST00000557342 TSSK4Q6SA08 328 aa12.97□□□□□ -0.33
SLIRP-209ENST00000557342 ARCQ7LC44 396 aa12.97□□□□□ -0.33
SLIRP-209ENST00000557342 TRMT11Q7Z4G4 463 aaKnown RBP12.97□□□□□ -0.33
SLIRP-209ENST00000557342 PHF13Q86YI8 300 aaPredicted RBP12.97□□□□□ -0.33
SLIRP-209ENST00000557342 CAMKK1Q8N5S9 505 aa12.97□□□□□ -0.33
SLIRP-209ENST00000557342 ZNF557Q8N988 423 aaPredicted RBP12.97□□□□□ -0.33
SLIRP-209ENST00000557342 ATRIPQ8WXE1 791 aa12.97□□□□□ -0.33
SLIRP-209ENST00000557342 NELL1Q92832 810 aa12.97□□□□□ -0.33
SLIRP-209ENST00000557342 RNF34Q969K3 372 aa12.97□□□□□ -0.33
SLIRP-209ENST00000557342 BTN2A3PQ96KV6 586 aa12.97□□□□□ -0.33
SLIRP-209ENST00000557342 PCDHB18PQ96TA0 734 aa12.97□□□□□ -0.33
SLIRP-209ENST00000557342 TTYH3Q9C0H2 523 aa12.97□□□□□ -0.33
SLIRP-209ENST00000557342 IFNKQ9P0W0 207 aa12.97□□□□□ -0.33
SLIRP-209ENST00000557342 SLC27A6Q9Y2P4 619 aa12.97□□□□□ -0.33
SLIRP-209ENST00000557342 STARD13Q9Y3M8 1113 aa12.97□□□□□ -0.33
SLIRP-209ENST00000557342 PAXBP1Q9Y5B6 917 aa12.97□□□□□ -0.33
SLIRP-209ENST00000557342 PROB1E7EW31 1015 aa12.96□□□□□ -0.33
SLIRP-209ENST00000557342 GOLGA8SH3BPF8 625 aa12.96□□□□□ -0.33
SLIRP-209ENST00000557342 K7ESF4 209 aa12.96□□□□□ -0.33
SLIRP-209ENST00000557342 M0QYT0 321 aa12.96□□□□□ -0.33
SLIRP-209ENST00000557342 GFRA2O00451 464 aa12.96□□□□□ -0.33
SLIRP-209ENST00000557342 TSPAN3O60637 253 aa12.96□□□□□ -0.33
SLIRP-209ENST00000557342 MOCS2O96007 188 aaPredicted RBP12.96□□□□□ -0.33
SLIRP-209ENST00000557342 F9P00740 461 aa12.96□□□□□ -0.33
SLIRP-209ENST00000557342 CALB1P05937 261 aa12.96□□□□□ -0.33
SLIRP-209ENST00000557342 CISD3P0C7P0 127 aa12.96□□□□□ -0.33
SLIRP-209ENST00000557342 TDGF1P13385 188 aa12.96□□□□□ -0.33
SLIRP-209ENST00000557342 ABCB4P21439 1286 aa12.96□□□□□ -0.33
SLIRP-209ENST00000557342 TIE1P35590 1138 aa12.96□□□□□ -0.33
SLIRP-209ENST00000557342 KIR2DL1P43626 348 aaPredicted RBP12.96□□□□□ -0.33
SLIRP-209ENST00000557342 GSCP56915 257 aaPredicted RBP12.96□□□□□ -0.33
SLIRP-209ENST00000557342 FAM133BQ5BKY9 247 aaKnown RBP12.96□□□□□ -0.33
SLIRP-209ENST00000557342 EOGTQ5NDL2 527 aa12.96□□□□□ -0.33
SLIRP-209ENST00000557342 PIK3R6Q5UE93 754 aa12.96□□□□□ -0.33
SLIRP-209ENST00000557342 PKN3Q6P5Z2 889 aa12.96□□□□□ -0.33
SLIRP-209ENST00000557342 MMS22LQ6ZRQ5 1243 aa12.96□□□□□ -0.33
SLIRP-209ENST00000557342 SND1Q7KZF4 910 aaKnown RBP eCLIP12.96□□□□□ -0.331e-12■■□□□ 11.5
SLIRP-209ENST00000557342 HJURPQ8NCD3 748 aaPredicted RBP12.96□□□□□ -0.33
SLIRP-209ENST00000557342 SLC30A5Q8TAD4 765 aa12.96□□□□□ -0.33
SLIRP-209ENST00000557342 PGAP3Q96FM1 320 aaPredicted RBP12.96□□□□□ -0.33
SLIRP-209ENST00000557342 NPY6RQ99463 290 aa12.96□□□□□ -0.33
SLIRP-209ENST00000557342 C11orf70Q9BRQ4 267 aa12.96□□□□□ -0.33
SLIRP-209ENST00000557342 ADAM22Q9P0K1 906 aa12.96□□□□□ -0.33
SLIRP-209ENST00000557342 MMP17Q9ULZ9 603 aa12.96□□□□□ -0.33
SLIRP-209ENST00000557342 EML5Q05BV3 1969 aa12.96□□□□□ -0.34
SLIRP-209ENST00000557342 MUC6Q6W4X9 2439 aa12.96□□□□□ -0.34
SLIRP-209ENST00000557342 ITIH6Q6UXX5 1313 aa12.95□□□□□ -0.34
SLIRP-209ENST00000557342 SYNJ2BP-COX16A0A087WUM0 186 aa12.95□□□□□ -0.34
SLIRP-209ENST00000557342 CCDC163A0A0D9SF12 145 aa12.95□□□□□ -0.34
SLIRP-209ENST00000557342 GOLGA6L7A0A1B0GV03 622 aa12.95□□□□□ -0.34
SLIRP-209ENST00000557342 KCNU1A8MYU2 1149 aa12.95□□□□□ -0.34
SLIRP-209ENST00000557342 HOXD9P28356 352 aaPredicted RBP12.95□□□□□ -0.34
SLIRP-209ENST00000557342 SLC6A4P31645 630 aa12.95□□□□□ -0.34
SLIRP-209ENST00000557342 PRKCIP41743 596 aa12.95□□□□□ -0.34
SLIRP-209ENST00000557342 SULT1E1P49888 294 aa12.95□□□□□ -0.34
SLIRP-209ENST00000557342 PITX1P78337 314 aaPredicted RBP12.95□□□□□ -0.34
SLIRP-209ENST00000557342 C1QBPQ07021 282 aaKnown RBP12.95□□□□□ -0.34
SLIRP-209ENST00000557342 KLHL30Q0D2K2 578 aa12.95□□□□□ -0.34
SLIRP-209ENST00000557342 MESP2Q0VG99 397 aa12.95□□□□□ -0.34
SLIRP-209ENST00000557342 NME3Q13232 169 aa12.95□□□□□ -0.34
SLIRP-209ENST00000557342 DMC1Q14565 340 aa12.95□□□□□ -0.34
SLIRP-209ENST00000557342 SLC25A52Q3SY17 297 aa12.95□□□□□ -0.34
SLIRP-209ENST00000557342 C2CD6Q53TS8 623 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms